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Study Type: simulation/modelling

21 to 30 of 204 Results

icon-2.6.6-swbvmix Mar 19, 2024 Haak, Helmuth; Bastin, Swantje, 2024, "icon-2.6.6-swbvmix", https://doi.org/10.17617/3.KUFQAM, Edmond, V1 Data set contain code of icon-2.6.6 + code changes related to the publication "Tuning the vertical mixing parameterisation in two different eddy-rich ocean models (ICON-O, v2.6.6 and FESOM, v2.5) only slightly reduces model-specific tropical Atlantic biases" by Swantje Bastein et...
MD simulation data and analyses for the article: The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status Mar 7, 2024 Rindfleisch, Tobias, 2024, "MD simulation data and analyses for the article: The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status", https://doi.org/10.17617/3.SQSR84, Edmond, V1 MD simulation data and analyses for the related publication. Please cite the article listed under "Related Publication" when using the data or scripts/analysis tools provided, and also specify the doi of this dataset.
Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus Feb 20, 2024 Girard, Martin; Olvera de la Cruz, Monica; Marko, John; Erbas, Aykut, 2024, "Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus", https://doi.org/10.17617/3.P08YSZ, Edmond, V1 Dataset for ring polymers under confinement as a model for chromatin in the cell nucleus
Escape problem of magnetotactic bacteria - Physiological magnetic field strength help magnetotactic bacteria navigate in simulated sediment Jan 31, 2024 Codutti, Agnese; Charsooghi, Mohammad; Marx, Konrad; Cerdá Doñate, Elisa; Munoz, Omar; Zaslansky, Paul; Teletzki, Vitali; Robinson, Tom; Faivre, Damien; Klumpp, Stefan, 2024, "Escape problem of magnetotactic bacteria - Physiological magnetic field strength help magnetotactic bacteria navigate in simulated sediment", https://doi.org/10.17617/3.KWU1HZ, Edmond, V1 Bacterial motility is typically studied in bulk solution, while their natural habitats often are complex environments. Here, we produced microfluidic channels that contained sediment-mimicking obstacles to study swimming of magnetotactic bacteria in a near-realistic environment t...
Data and Code for Understanding the Role of Naive Learners in Cultural Change Jan 30, 2024 Chimento, Michael, 2023, "Data and Code for Understanding the Role of Naive Learners in Cultural Change", https://doi.org/10.17617/3.RLRJZC, Edmond, V2 These are the data and code to reproduce the simulations and figures from the manuscript "Understanding the Role of Naive Learners in Cultural Change" by Michael Chimento and Lucy Aplin. This is a simulation study where both social transmission and reinforcement learning are comb...
MPI-10: Haptic-Auditory Measurements from Tool-Surface Interactions Jan 17, 2024 Khojasteh, Behnam; Shao, Yitian; Kuchenbecker, Katherine J., 2024, "MPI-10: Haptic-Auditory Measurements from Tool-Surface Interactions", https://doi.org/10.17617/3.PM8R94, Edmond, V1 This dataset consists of haptic-auditory recordings as a human explores 10 surfaces with 3 steel tools, including accelerations of the tool and finger, force and torque applied to the surface, and contact sounds.
Experimental and computational data from MoS-ion deposition on graphene Jan 17, 2024 Zhang, Xuejiao, 2023, "Experimental and computational data from MoS-ion deposition on graphene", https://doi.org/10.17617/3.O1RHX5, Edmond, V2 XYZ structures and trajectories for MoS-ions and molecules modeling, as well as the molecular dynamics at the level of Density Functional Theory.
Supplementary Model Files for "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis" (EMNLP 2020) Jan 16, 2024 Jin, Zhijing, 2024, "Supplementary Model Files for "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis" (EMNLP 2020)", https://doi.org/10.17617/3.VKWOI9, Edmond, V1 - Paper: "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis" (EMNLP 2020) by Xiaoyu Xing, Zhijing Jin, Di Jin, Bingning Wang, Qi Zhang, and Xuanjing Huang. - Paper link: https://arxiv.org/abs/2009.07964 - Abstract: Aspect-based sentiment a...
Data for "Spatiotemporal electric-field characterization of synthesized light transients" Jan 15, 2024 Mamaikin, Mikhail; Ridente, Enrico; Krausz, Ferenc; Karpowicz, Nicholas, 2024, "Data for "Spatiotemporal electric-field characterization of synthesized light transients"", https://doi.org/10.17617/3.JQIWLU, Edmond, V1 The versatile manipulation of electron motion on the atomic scale calls for the shaping of the electric field evolution of light within a single cycle. The super-octave bandwidth required for this task dramatically increases the probability of formation of spatio-temporal distort...
Supplementary data for Corr2Cause: "Can Large Language Models Infer Causation from Correlation?" Jan 10, 2024 Jin, Zhijing, 2023, "Supplementary data for Corr2Cause: "Can Large Language Models Infer Causation from Correlation?"", https://doi.org/10.17617/3.VYGWHY, Edmond, V3 Paper: "Can Large Language Models Infer Causation from Correlation?" (2023) by Zhijing Jin, Jiarui Liu, Zhiheng Lyu, Spencer Poff, Mrinmaya Sachan, Rada Mihalcea, Mona Diab, Bernhard Schölkopf. (http://arxiv.org/abs/2306.05836) Abstract: Causal inference is one of the hallmarks...

icon-2.6.6-swbvmix

Mar 19, 2024

Haak, Helmuth; Bastin, Swantje, 2024, "icon-2.6.6-swbvmix", https://doi.org/10.17617/3.KUFQAM, Edmond, V1

Data set contain code of icon-2.6.6 + code changes related to the publication "Tuning the vertical mixing parameterisation in two different eddy-rich ocean models (ICON-O, v2.6.6 and FESOM, v2.5) only slightly reduces model-specific tropical Atlantic biases" by Swantje Bastein et...

MD simulation data and analyses for the article: The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status

Mar 7, 2024

Rindfleisch, Tobias, 2024, "MD simulation data and analyses for the article: The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status", https://doi.org/10.17617/3.SQSR84, Edmond, V1

MD simulation data and analyses for the related publication. Please cite the article listed under "Related Publication" when using the data or scripts/analysis tools provided, and also specify the doi of this dataset.

Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus

Feb 20, 2024

Girard, Martin; Olvera de la Cruz, Monica; Marko, John; Erbas, Aykut, 2024, "Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus", https://doi.org/10.17617/3.P08YSZ, Edmond, V1

Dataset for ring polymers under confinement as a model for chromatin in the cell nucleus

Escape problem of magnetotactic bacteria - Physiological magnetic field strength help magnetotactic bacteria navigate in simulated sediment

Jan 31, 2024

Codutti, Agnese; Charsooghi, Mohammad; Marx, Konrad; Cerdá Doñate, Elisa; Munoz, Omar; Zaslansky, Paul; Teletzki, Vitali; Robinson, Tom; Faivre, Damien; Klumpp, Stefan, 2024, "Escape problem of magnetotactic bacteria - Physiological magnetic field strength help magnetotactic bacteria navigate in simulated sediment", https://doi.org/10.17617/3.KWU1HZ, Edmond, V1

Bacterial motility is typically studied in bulk solution, while their natural habitats often are complex environments. Here, we produced microfluidic channels that contained sediment-mimicking obstacles to study swimming of magnetotactic bacteria in a near-realistic environment t...

Data and Code for Understanding the Role of Naive Learners in Cultural Change

Jan 30, 2024

Chimento, Michael, 2023, "Data and Code for Understanding the Role of Naive Learners in Cultural Change", https://doi.org/10.17617/3.RLRJZC, Edmond, V2

These are the data and code to reproduce the simulations and figures from the manuscript "Understanding the Role of Naive Learners in Cultural Change" by Michael Chimento and Lucy Aplin. This is a simulation study where both social transmission and reinforcement learning are comb...

MPI-10: Haptic-Auditory Measurements from Tool-Surface Interactions

Jan 17, 2024

Khojasteh, Behnam; Shao, Yitian; Kuchenbecker, Katherine J., 2024, "MPI-10: Haptic-Auditory Measurements from Tool-Surface Interactions", https://doi.org/10.17617/3.PM8R94, Edmond, V1

This dataset consists of haptic-auditory recordings as a human explores 10 surfaces with 3 steel tools, including accelerations of the tool and finger, force and torque applied to the surface, and contact sounds.

Experimental and computational data from MoS-ion deposition on graphene

Jan 17, 2024

Zhang, Xuejiao, 2023, "Experimental and computational data from MoS-ion deposition on graphene", https://doi.org/10.17617/3.O1RHX5, Edmond, V2

XYZ structures and trajectories for MoS-ions and molecules modeling, as well as the molecular dynamics at the level of Density Functional Theory.

Supplementary Model Files for "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis" (EMNLP 2020)

Jan 16, 2024

Jin, Zhijing, 2024, "Supplementary Model Files for "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis" (EMNLP 2020)", https://doi.org/10.17617/3.VKWOI9, Edmond, V1

- Paper: "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis" (EMNLP 2020) by Xiaoyu Xing*, Zhijing Jin*, Di Jin, Bingning Wang, Qi Zhang, and Xuanjing Huang. - Paper link: https://arxiv.org/abs/2009.07964 - Abstract: Aspect-based sentiment a...

Data for "Spatiotemporal electric-field characterization of synthesized light transients"

Jan 15, 2024

Mamaikin, Mikhail; Ridente, Enrico; Krausz, Ferenc; Karpowicz, Nicholas, 2024, "Data for "Spatiotemporal electric-field characterization of synthesized light transients"", https://doi.org/10.17617/3.JQIWLU, Edmond, V1

The versatile manipulation of electron motion on the atomic scale calls for the shaping of the electric field evolution of light within a single cycle. The super-octave bandwidth required for this task dramatically increases the probability of formation of spatio-temporal distort...

Supplementary data for Corr2Cause: "Can Large Language Models Infer Causation from Correlation?"

Jan 10, 2024

Jin, Zhijing, 2023, "Supplementary data for Corr2Cause: "Can Large Language Models Infer Causation from Correlation?"", https://doi.org/10.17617/3.VYGWHY, Edmond, V3

Paper: "Can Large Language Models Infer Causation from Correlation?" (2023) by Zhijing Jin, Jiarui Liu, Zhiheng Lyu, Spencer Poff, Mrinmaya Sachan, Rada Mihalcea, Mona Diab*, Bernhard Schölkopf*. (http://arxiv.org/abs/2306.05836) Abstract: Causal inference is one of the hallmarks...

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