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Study Type: simulation/modelling

11 to 20 of 204 Results

Self-organization of filamentous cyanobacteria Apr 30, 2024 Kurjahn, Maximilian Stephan, 2024, "Self-organization of filamentous cyanobacteria", https://doi.org/10.17617/3.YE7U5M, Edmond, V1 Supplementary Videos PhD Thesis, Maximilian Kurjahn, "Self-organization of filamentous cyanobacteria", Georg-August-Universität Göttingen (2024)
Understanding Anomalous Gas-Phase Peak Shifts in Dip-and-Pull Ambient Pressure XPS Experiments Apr 29, 2024 Teschner, Detre, 2024, "Understanding Anomalous Gas-Phase Peak Shifts in Dip-and-Pull Ambient Pressure XPS Experiments", https://doi.org/10.17617/3.ONEMOR, Edmond, V1 Detre Teschner, Julius Plescher, Simone Piccinin, Travis E. Jones, Adnan Hammud, Franz Schmidt, Axel Knop-Gericke, Hendrik Bluhm, and Andrey Shavorskiy: Understanding Anomalous Gas-Phase Peak Shifts in Dip-and-Pull Ambient Pressure XPS Experiments; https://doi.org/10.1021/acs.jpc...
Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control" Apr 12, 2024 Kramer, Sarah C, 2022, "Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control"", https://doi.org/10.17617/3.TBOPCK, Edmond, V2 Code to infer the strength and duration of interactions between flu and RSV
Weyl spin-momentum locking in a chiral topological semimetal Apr 9, 2024 Krieger, Jonas Andreas; Stolz, Samuel; Robredo, Iñigo; Manna, Kaustuv; McFarlane, Emily C.; Date, Mihir; Pal, Banabir; Yang, Jiabao; Guedes, Eduardo B.; Dil, J. Hugo; Polley, Craig M.; Leandersson, Mats; Shekhar, Chandra; Borrmann, Horst; Yang, Qun; Lin, Mao; Strocov, Vladimir N.; Caputo, Marcus; Watson, Matthew D.; Kim, Timur K.; Cacho, Cephise; Mazzola, Federico; Fujii, Jun; Vobornik, Ivana; Parkin, Stuart S. P.; Bradlyn, Barry; Felser, Claudia; Vergniory, Maia G.; Schröter, Niels B. M., 2024, "Weyl spin-momentum locking in a chiral topological semimetal", https://doi.org/10.17617/3.GIT9JN, Edmond, V1 Accompanying dataset for the paper 'Weyl spin-momentum locking in a chiral topological semimetal'. Nat Commun 15, 3720 (2024). https://doi.org/10.1038/s41467-024-47976-0
Phase diagrams of bone remodeling using a 3D stochastic cellular automaton Apr 4, 2024 Heller, Anna-Dorothea; Valleriani, Angelo; Cipitria, Dr. Amaia, 2024, "Phase diagrams of bone remodeling using a 3D stochastic cellular automaton", https://doi.org/10.17617/3.FNXOA3, Edmond, V1 We propose a 3D stochastic cellular automaton model, governed by evolutionary game theory, to simulate bone remodeling dynamics. The model includes four voxel states: Formation, Quiescence, Resorption, and Environment. We simulate the Resorption and Formation processes on separat...
Towards the direct simulation of the quasi-biennial oscillation in a global storm-resolving model Apr 2, 2024 Franke, Henning, 2024, "Towards the direct simulation of the quasi-biennial oscillation in a global storm-resolving model", https://doi.org/10.17617/3.A4LJEB, Edmond, V1 This dataset provides additional information for the related publication (see below). Details for the content are given in the README.pdf file.
Quantifying single cell lipid signaling kinetics after photo-stimulation Mar 28, 2024 Gonzales, David Thomas, 2023, "Quantifying single cell lipid signaling kinetics after photo-stimulation", https://doi.org/10.17617/3.3JM5WX, Edmond, V3
A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length. Mar 26, 2024 Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1 Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses...
Code and data for the manuscript 'A numerical compass for experiment design in chemical kinetics and molecular property estimation' Mar 22, 2024 Krueger, Matteo; Berkemeier, Thomas, 2023, "Code and data for the manuscript 'A numerical compass for experiment design in chemical kinetics and molecular property estimation'", https://doi.org/10.17617/3.D5PCQK, Edmond, V3 The numerical compass (NC) method integrates kinetic models, global optimization, ensemble methods, and machine learning to identify experimental conditions with the greatest potential to constrain kinetic parameters. The approach is based on the quantification of model output va...
Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission Mar 20, 2024 Chimento, Michael, 2024, "Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission", https://doi.org/10.17617/3.U3NSZT, Edmond, V2 These are the data and code to reproduce the simulations and figures from the manuscript "The contribution of movement to social network structure and spreading dynamics under simple and complex transmission" by Michael Chimento and Damien Farine. This is a simulation study where...

Self-organization of filamentous cyanobacteria

Apr 30, 2024

Kurjahn, Maximilian Stephan, 2024, "Self-organization of filamentous cyanobacteria", https://doi.org/10.17617/3.YE7U5M, Edmond, V1

Supplementary Videos PhD Thesis, Maximilian Kurjahn, "Self-organization of filamentous cyanobacteria", Georg-August-Universität Göttingen (2024)

Understanding Anomalous Gas-Phase Peak Shifts in Dip-and-Pull Ambient Pressure XPS Experiments

Apr 29, 2024

Teschner, Detre, 2024, "Understanding Anomalous Gas-Phase Peak Shifts in Dip-and-Pull Ambient Pressure XPS Experiments", https://doi.org/10.17617/3.ONEMOR, Edmond, V1

Detre Teschner, Julius Plescher, Simone Piccinin, Travis E. Jones, Adnan Hammud, Franz Schmidt, Axel Knop-Gericke, Hendrik Bluhm, and Andrey Shavorskiy: Understanding Anomalous Gas-Phase Peak Shifts in Dip-and-Pull Ambient Pressure XPS Experiments; https://doi.org/10.1021/acs.jpc...

Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control"

Apr 12, 2024

Kramer, Sarah C, 2022, "Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control"", https://doi.org/10.17617/3.TBOPCK, Edmond, V2

Code to infer the strength and duration of interactions between flu and RSV

Weyl spin-momentum locking in a chiral topological semimetal

Apr 9, 2024

Krieger, Jonas Andreas; Stolz, Samuel; Robredo, Iñigo; Manna, Kaustuv; McFarlane, Emily C.; Date, Mihir; Pal, Banabir; Yang, Jiabao; Guedes, Eduardo B.; Dil, J. Hugo; Polley, Craig M.; Leandersson, Mats; Shekhar, Chandra; Borrmann, Horst; Yang, Qun; Lin, Mao; Strocov, Vladimir N.; Caputo, Marcus; Watson, Matthew D.; Kim, Timur K.; Cacho, Cephise; Mazzola, Federico; Fujii, Jun; Vobornik, Ivana; Parkin, Stuart S. P.; Bradlyn, Barry; Felser, Claudia; Vergniory, Maia G.; Schröter, Niels B. M., 2024, "Weyl spin-momentum locking in a chiral topological semimetal", https://doi.org/10.17617/3.GIT9JN, Edmond, V1

Accompanying dataset for the paper 'Weyl spin-momentum locking in a chiral topological semimetal'. Nat Commun 15, 3720 (2024). https://doi.org/10.1038/s41467-024-47976-0

Phase diagrams of bone remodeling using a 3D stochastic cellular automaton

Apr 4, 2024

Heller, Anna-Dorothea; Valleriani, Angelo; Cipitria, Dr. Amaia, 2024, "Phase diagrams of bone remodeling using a 3D stochastic cellular automaton", https://doi.org/10.17617/3.FNXOA3, Edmond, V1

We propose a 3D stochastic cellular automaton model, governed by evolutionary game theory, to simulate bone remodeling dynamics. The model includes four voxel states: Formation, Quiescence, Resorption, and Environment. We simulate the Resorption and Formation processes on separat...

Towards the direct simulation of the quasi-biennial oscillation in a global storm-resolving model

Apr 2, 2024

Franke, Henning, 2024, "Towards the direct simulation of the quasi-biennial oscillation in a global storm-resolving model", https://doi.org/10.17617/3.A4LJEB, Edmond, V1

This dataset provides additional information for the related publication (see below). Details for the content are given in the README.pdf file.

Quantifying single cell lipid signaling kinetics after photo-stimulation

Mar 28, 2024

Gonzales, David Thomas, 2023, "Quantifying single cell lipid signaling kinetics after photo-stimulation", https://doi.org/10.17617/3.3JM5WX, Edmond, V3

A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.

Mar 26, 2024

Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1

Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses...

Code and data for the manuscript 'A numerical compass for experiment design in chemical kinetics and molecular property estimation'

Mar 22, 2024

Krueger, Matteo; Berkemeier, Thomas, 2023, "Code and data for the manuscript 'A numerical compass for experiment design in chemical kinetics and molecular property estimation'", https://doi.org/10.17617/3.D5PCQK, Edmond, V3

The numerical compass (NC) method integrates kinetic models, global optimization, ensemble methods, and machine learning to identify experimental conditions with the greatest potential to constrain kinetic parameters. The approach is based on the quantification of model output va...

Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission

Mar 20, 2024

Chimento, Michael, 2024, "Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission", https://doi.org/10.17617/3.U3NSZT, Edmond, V2

These are the data and code to reproduce the simulations and figures from the manuscript "The contribution of movement to social network structure and spreading dynamics under simple and complex transmission" by Michael Chimento and Damien Farine. This is a simulation study where...

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