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Study Type: observational Subject: Biology

11 to 20 of 62 Results

Thin Layer Chromatography of Gut Extracts from Adults and Larvae of Donacia versicolorea and Macroplea mutica Mar 26, 2025 Simao Pinto de Carvalho, Ana; Kirsch, Roy, 2025, "Thin Layer Chromatography of Gut Extracts from Adults and Larvae of Donacia versicolorea and Macroplea mutica", https://doi.org/10.17617/3.1PFBO0, Edmond, V1 TLC plates to assess the enzymatic activity of pools of 3 guts of Donacia versicolorea (Dver) and Macroplea mutica (Mmut) larvae and adults. 51 μg of protein were incubated with 0.4% (w/v) of either Polygalacturonic Acid, Carboxymethyl Cellulose 4M or Xyloglucan in a 20 mM citrate/phosphate buffer pH 5.0 to a total volume of 20 μl at 40 °C for abou...
Seasonality supplement information - Taxonomy and Sequence Tables Mar 10, 2025 Lemoine, Marion; Wöhner, Thomas; Kaltenpoth, Martin, 2024, "Seasonality supplement information - Taxonomy and Sequence Tables", https://doi.org/10.17617/3.QUGYBW, Edmond, V2 The data set contains sequence and taxonomy tables as well as the metadata associated with the amplicon sequences corresponding to the bacterial and fungal communities of wild caught Drosophila melanogaster (BioProject PRJNA1148441 on NCBI ).
Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race" Feb 12, 2025 Chimento, Michael; Dalmaijer, Edwin; Klump, Barbara; Aplin, Lucy, 2025, "Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"", https://doi.org/10.17617/3.XD6UEW, Edmond, V1 This repository contains the underlying data and code to reproduce the manuscript "Temporal dynamics and policy implications in an innovation arms race". The repository contains the following data sources: 1) anonymized observational data of bin protections used by residents in a suburb of Sydney Australia from 2023 and 2024, 2) observational data...
Symbiosis and horizontal gene transfer promote herbivory in the megadiverse leaf beetles Jan 8, 2025 Kirsch, Roy; Okamura, Yu; García-Lozano, Marleny; Weiss, Benjamin; Keller, Jean; Vogel, Heiko; Fukumori, Kayoko; Fukatsu, Takema; Konstantinov, Alexander; Montagna, Matteo; Moseyko, Alexey; Riley, Edward; Slipinski, Adam; Vencl, Fredric; Windsor, Donald; Salem, Hassan; Kaltenpoth, Martin; Pauchet, Yannick, 2025, "Symbiosis and horizontal gene transfer promote herbivory in the megadiverse leaf beetles", https://doi.org/10.17617/3.W1NNIV, Edmond, V1 Beetles that feed on the nutritionally depauperate and recalcitrant tissues provided by the leaves, stems, and roots of living plants comprise one quarter of herbivorous insect species. Among the key adaptations for herbivory are plant cell wall degrading enzymes (PCWDEs) that break down the fastidious polymers in the cell wall and grant access to...
Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation Dec 20, 2024 Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V2 This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: https://github.com/alexhang212/3D-SOCS
Data and code associated with "Reduced levels of relatedness indicate that great-tailed grackles disperse further at the edge of their range" Dec 20, 2024 Lukas, Dieter; Logan, Corina, 2024, "Data and code associated with "Reduced levels of relatedness indicate that great-tailed grackles disperse further at the edge of their range"", https://doi.org/10.17617/3.Z1VCPT, Edmond, V1 The files included in this repository contain the data and scripts required for the analyses presented in Lukas, Blackwell, Edrisi, Hardy, LeGrande, Marfori, McCune, Sevchik, Smith, Logan (2024) "Reduced levels of relatedness indicate that great-tailed grackles disperse further at the edge of their range" Description of the files: 1) Lukas_GrackleD...
Scripts for data analysis of "Chromosome architecture and low cohesion bias acrocentric chromosomes towards aneuploidy during mammalian meiosis" Nov 1, 2024 Bellou, Eirini; Mönnich, Eike Urs; Politi, Antonio; Schuh, Melina, 2024, "Scripts for data analysis of "Chromosome architecture and low cohesion bias acrocentric chromosomes towards aneuploidy during mammalian meiosis"", https://doi.org/10.17617/3.NPIDK2, Edmond, V1 This code data set is associated to a publication. The code has been used to process and analyze microscopy images of mammalian oocytes during meiosis. In particular the code allowed to track chromosomes in time lapse images, morphometrics and segmentation of kinetochores.
Code and data: A long-term study on food choices and nutritional goals of a leaf-eating primate Oct 23, 2024 Lauer, Patrick; Chapman, Colin; Omeja, Patrick; Rothman, Jessica; Kalbitzer, Urs, 2024, "Code and data: A long-term study on food choices and nutritional goals of a leaf-eating primate", https://doi.org/10.17617/3.XCUGKY, Edmond, V1 This repository contains the code and data that can be used to replicate the main results of the manuscript titled "A long-term study on food choices and nutritional goals of a leaf-eating primate". It includes two R Scripts, Script_Figure1_and_2.R and Script_Figure3.R, as well as 6 data files in .csv format. Detailed descriptions of these files ca...
BuckTales : A multi-UAV dataset for multi-object tracking and re-identification of wild antelopes Oct 22, 2024 naik, Hemal; Yang, Junran; Das, Dipin; Crofoot, Margaret; Rathore, Akanksha; Sridhar, Vivek Hari, 2024, "BuckTales : A multi-UAV dataset for multi-object tracking and re-identification of wild antelopes", https://doi.org/10.17617/3.JCZ9WK, Edmond, V1 The dataset contains UAV footage of wild antelopes (blackbucks) in grassland habitats. It can be mainly used for two tasks: Multi-object tracking (MOT) and Re-Identification (Re-ID). We provide annotations for the position of animals in each frame, allowing us to offer very long videos (up to 3 min) completely annotated while maintaining the identi...
Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos Aug 22, 2024 Chan, Hoi Hang; Putra, Prasetia; Schupp, Harald; Köchling, Johanna; Straßheim, Jana; Renner, Britta; Schroeder, Julia; Pearse, William D; Nakagawa, Shinichi; Burke, Terry; Griesser, Michael; Meltzer, Andrea; Lubrano, Saverio; Kano, Fumihiro, 2024, "Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos", https://doi.org/10.17617/3.EZNKYV, Edmond, V1 Sample dataset and weights for YOLO-Behaviour framework. Required to run demo code in the documentation. Also provided bounding box datasets for 4 case studies in YOLO format. The human dataset is not included due to privacy concerns. Code: https://github.com/alexhang212/YOLO_Behaviour_Repo Documentation: https://alexhang212.github.io/YOLO_Behaviou...

Thin Layer Chromatography of Gut Extracts from Adults and Larvae of Donacia versicolorea and Macroplea mutica

Mar 26, 2025

Simao Pinto de Carvalho, Ana; Kirsch, Roy, 2025, "Thin Layer Chromatography of Gut Extracts from Adults and Larvae of Donacia versicolorea and Macroplea mutica", https://doi.org/10.17617/3.1PFBO0, Edmond, V1

TLC plates to assess the enzymatic activity of pools of 3 guts of Donacia versicolorea (Dver) and Macroplea mutica (Mmut) larvae and adults. 51 μg of protein were incubated with 0.4% (w/v) of either Polygalacturonic Acid, Carboxymethyl Cellulose 4M or Xyloglucan in a 20 mM citrate/phosphate buffer pH 5.0 to a total volume of 20 μl at 40 °C for abou...

Seasonality supplement information - Taxonomy and Sequence Tables

Mar 10, 2025

Lemoine, Marion; Wöhner, Thomas; Kaltenpoth, Martin, 2024, "Seasonality supplement information - Taxonomy and Sequence Tables", https://doi.org/10.17617/3.QUGYBW, Edmond, V2

The data set contains sequence and taxonomy tables as well as the metadata associated with the amplicon sequences corresponding to the bacterial and fungal communities of wild caught Drosophila melanogaster (BioProject PRJNA1148441 on NCBI ).

Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"

Feb 12, 2025

Chimento, Michael; Dalmaijer, Edwin; Klump, Barbara; Aplin, Lucy, 2025, "Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"", https://doi.org/10.17617/3.XD6UEW, Edmond, V1

This repository contains the underlying data and code to reproduce the manuscript "Temporal dynamics and policy implications in an innovation arms race". The repository contains the following data sources: 1) anonymized observational data of bin protections used by residents in a suburb of Sydney Australia from 2023 and 2024, 2) observational data...

Symbiosis and horizontal gene transfer promote herbivory in the megadiverse leaf beetles

Jan 8, 2025

Kirsch, Roy; Okamura, Yu; García-Lozano, Marleny; Weiss, Benjamin; Keller, Jean; Vogel, Heiko; Fukumori, Kayoko; Fukatsu, Takema; Konstantinov, Alexander; Montagna, Matteo; Moseyko, Alexey; Riley, Edward; Slipinski, Adam; Vencl, Fredric; Windsor, Donald; Salem, Hassan; Kaltenpoth, Martin; Pauchet, Yannick, 2025, "Symbiosis and horizontal gene transfer promote herbivory in the megadiverse leaf beetles", https://doi.org/10.17617/3.W1NNIV, Edmond, V1

Beetles that feed on the nutritionally depauperate and recalcitrant tissues provided by the leaves, stems, and roots of living plants comprise one quarter of herbivorous insect species. Among the key adaptations for herbivory are plant cell wall degrading enzymes (PCWDEs) that break down the fastidious polymers in the cell wall and grant access to...

Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation

Dec 20, 2024

Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V2

This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: https://github.com/alexhang212/3D-SOCS

Data and code associated with "Reduced levels of relatedness indicate that great-tailed grackles disperse further at the edge of their range"

Dec 20, 2024

Lukas, Dieter; Logan, Corina, 2024, "Data and code associated with "Reduced levels of relatedness indicate that great-tailed grackles disperse further at the edge of their range"", https://doi.org/10.17617/3.Z1VCPT, Edmond, V1

The files included in this repository contain the data and scripts required for the analyses presented in Lukas, Blackwell, Edrisi, Hardy, LeGrande, Marfori, McCune, Sevchik, Smith, Logan (2024) "Reduced levels of relatedness indicate that great-tailed grackles disperse further at the edge of their range" Description of the files: 1) Lukas_GrackleD...

Scripts for data analysis of "Chromosome architecture and low cohesion bias acrocentric chromosomes towards aneuploidy during mammalian meiosis"

Nov 1, 2024

Bellou, Eirini; Mönnich, Eike Urs; Politi, Antonio; Schuh, Melina, 2024, "Scripts for data analysis of "Chromosome architecture and low cohesion bias acrocentric chromosomes towards aneuploidy during mammalian meiosis"", https://doi.org/10.17617/3.NPIDK2, Edmond, V1

This code data set is associated to a publication. The code has been used to process and analyze microscopy images of mammalian oocytes during meiosis. In particular the code allowed to track chromosomes in time lapse images, morphometrics and segmentation of kinetochores.

Code and data: A long-term study on food choices and nutritional goals of a leaf-eating primate

Oct 23, 2024

Lauer, Patrick; Chapman, Colin; Omeja, Patrick; Rothman, Jessica; Kalbitzer, Urs, 2024, "Code and data: A long-term study on food choices and nutritional goals of a leaf-eating primate", https://doi.org/10.17617/3.XCUGKY, Edmond, V1

This repository contains the code and data that can be used to replicate the main results of the manuscript titled "A long-term study on food choices and nutritional goals of a leaf-eating primate". It includes two R Scripts, Script_Figure1_and_2.R and Script_Figure3.R, as well as 6 data files in .csv format. Detailed descriptions of these files ca...

BuckTales : A multi-UAV dataset for multi-object tracking and re-identification of wild antelopes

Oct 22, 2024

naik, Hemal; Yang, Junran; Das, Dipin; Crofoot, Margaret; Rathore, Akanksha; Sridhar, Vivek Hari, 2024, "BuckTales : A multi-UAV dataset for multi-object tracking and re-identification of wild antelopes", https://doi.org/10.17617/3.JCZ9WK, Edmond, V1

The dataset contains UAV footage of wild antelopes (blackbucks) in grassland habitats. It can be mainly used for two tasks: Multi-object tracking (MOT) and Re-Identification (Re-ID). We provide annotations for the position of animals in each frame, allowing us to offer very long videos (up to 3 min) completely annotated while maintaining the identi...

Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos

Aug 22, 2024

Chan, Hoi Hang; Putra, Prasetia; Schupp, Harald; Köchling, Johanna; Straßheim, Jana; Renner, Britta; Schroeder, Julia; Pearse, William D; Nakagawa, Shinichi; Burke, Terry; Griesser, Michael; Meltzer, Andrea; Lubrano, Saverio; Kano, Fumihiro, 2024, "Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos", https://doi.org/10.17617/3.EZNKYV, Edmond, V1

Sample dataset and weights for YOLO-Behaviour framework. Required to run demo code in the documentation. Also provided bounding box datasets for 4 case studies in YOLO format. The human dataset is not included due to privacy concerns. Code: https://github.com/alexhang212/YOLO_Behaviour_Repo Documentation: https://alexhang212.github.io/YOLO_Behaviou...

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