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Study Type: simulation/modelling Subject: Biology

11 to 20 of 49 Results

Data for "PLK1 inhibition delays mitotic entry revealing changes to the phosphoproteome of mammalian cells early in division" Mar 4, 2025 Gobran, Monica; Politi, Antonio; Welp, Luisa; Jakobi, Jasmin; Urlaub, Henning; Lenart, Peter, 2025, "Data for "PLK1 inhibition delays mitotic entry revealing changes to the phosphoproteome of mammalian cells early in division"", https://doi.org/10.17617/3.OYMBJ9, Edmond, V1 Supplemental Data to the journal article. Contains code to simulate a kinetic model for plk1 inhibition.
Quantification of lipid sorting during clathrin-mediated endocytosis data and codes Mar 3, 2025 Lernnartz, Hjoerdis Mathilda, 2025, "Quantification of lipid sorting during clathrin-mediated endocytosis data and codes", https://doi.org/10.17617/3.GLIVDU, Edmond, V1 Data and codes for the paper with the titel "Quantification of lipid sorting during clathrin-mediated endocytosis ", abstract: Clathrin-mediated endocytosis is a major transport route for proteins from the plasma membrane to the interior of the cell. While the recruitment of cargo proteins to clathrin-coated pits is well understood, it remains an o...
Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race" Feb 12, 2025 Chimento, Michael; Dalmaijer, Edwin; Klump, Barbara; Aplin, Lucy, 2025, "Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"", https://doi.org/10.17617/3.XD6UEW, Edmond, V1 This repository contains the underlying data and code to reproduce the manuscript "Temporal dynamics and policy implications in an innovation arms race". The repository contains the following data sources: 1) anonymized observational data of bin protections used by residents in a suburb of Sydney Australia from 2023 and 2024, 2) observational data...
Flux balance analysis for comparison of CORE with other pathways Feb 10, 2025 Satanowski, Ari; Marchal, Daniel; He, Hai; Smith, Edward Nicholas; Erb, Tobias, 2025, "Flux balance analysis for comparison of CORE with other pathways", https://doi.org/10.17617/3.V8KJFV, Edmond, V1 Models and python scripts for flux balance analysis (FBA) of a new-to-nature CO2 reduction module, the CORE cycle.
Evolvability Jan 16, 2025 Michael Barnett, 2024, "Evolvability", https://doi.org/10.17617/3.5PEE52, Edmond, V4 Introduction This record contains data accompanying the paper: Experimental evolution of evolvability Michael Barnett, Lena Zeller, Paul B. Rainey doi:10.1101/2024.05.01.592015 Content of expevolv.zip The folder 'Population B whole-genome seq' contains all fastQ files derived from whole-genome re-sequencing of clones within 'meta-population B' that...
Computational Models for High-Spin Forms of the S2 State of the Oxygen-Evolving Complex Jan 11, 2025 Pantazis, Dimitrios; Drosou, Maria; Mermigki, Markella Aliki, 2024, "Computational Models for High-Spin Forms of the S2 State of the Oxygen-Evolving Complex", https://doi.org/10.17617/3.YVJ4UJ, Edmond, V2 Computational models for the S2 state of the oxygen-evolving complex of Photosystem II: Input files for multilayer (QM/QM) optimizations, optimized Cartesian coordinates, and results of time-dependent DFT calculations for XAS spectra.
Data and codes from "Causal inference concepts can guide research into the effects of climate on infectious diseases" Oct 22, 2024 Barrero Guevara, Laura Andrea; Kramer, Sarah; Kurth, Tobias; Domenech de Cellès, Matthieu, 2024, "Data and codes from "Causal inference concepts can guide research into the effects of climate on infectious diseases"", https://doi.org/10.17617/3.9CWN7W, Edmond, V1 Data and R codes associated with the manuscript "Causal inference concepts can guide research into the effects of climate on infectious diseases"
Data and codes from "Estimating the optimal age for infant measles vaccination" Oct 8, 2024 Goult, Elizabeth; Barrero Guevara, Laura Andrea; Briga, Michael; Domenech de Cellès, Matthieu, 2024, "Data and codes from "Estimating the optimal age for infant measles vaccination"", https://doi.org/10.17617/3.50X626, Edmond, V1 Data and R codes associated with the manuscript "Estimating the optimal age for infant measles vaccination".
Force-field-based energy minimizations of cellulose crystals Oct 7, 2024 Kullmann, Richard; Weikl, Thomas, 2023, "Force-field-based energy minimizations of cellulose crystals", https://doi.org/10.17617/3.1FPW2C, Edmond, V2 Structures and energy terms for cellulose Ibeta and II crystals composed of 52 chains of cellulose 6-mers, 8-mers, 10-mers, or 12-mers obtained from energy minimizations in two force fields.
Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila" Aug 10, 2024 Bidaye, Salil Sanjay, 2024, "Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"", https://doi.org/10.17617/3.OIX8RZ, Edmond, V2 "Neural circuit mechanisms underlying context-specific halting in Drosophila" by Neha Sapkal, Nino Mancini, Divya Sthanu Kumar, Nico Spiller, Kazuma Murakami, Gianna Vitelli, Benjamin Bargeron, Kate Maier, Katharina Eichler, Gregory S.X.E. Jefferis, Philip K. Shiu, Gabriella R. Sterne and Salil S. Bidaye.

Data for "PLK1 inhibition delays mitotic entry revealing changes to the phosphoproteome of mammalian cells early in division"

Mar 4, 2025

Gobran, Monica; Politi, Antonio; Welp, Luisa; Jakobi, Jasmin; Urlaub, Henning; Lenart, Peter, 2025, "Data for "PLK1 inhibition delays mitotic entry revealing changes to the phosphoproteome of mammalian cells early in division"", https://doi.org/10.17617/3.OYMBJ9, Edmond, V1

Supplemental Data to the journal article. Contains code to simulate a kinetic model for plk1 inhibition.

Quantification of lipid sorting during clathrin-mediated endocytosis data and codes

Mar 3, 2025

Lernnartz, Hjoerdis Mathilda, 2025, "Quantification of lipid sorting during clathrin-mediated endocytosis data and codes", https://doi.org/10.17617/3.GLIVDU, Edmond, V1

Data and codes for the paper with the titel "Quantification of lipid sorting during clathrin-mediated endocytosis ", abstract: Clathrin-mediated endocytosis is a major transport route for proteins from the plasma membrane to the interior of the cell. While the recruitment of cargo proteins to clathrin-coated pits is well understood, it remains an o...

Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"

Feb 12, 2025

Chimento, Michael; Dalmaijer, Edwin; Klump, Barbara; Aplin, Lucy, 2025, "Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"", https://doi.org/10.17617/3.XD6UEW, Edmond, V1

This repository contains the underlying data and code to reproduce the manuscript "Temporal dynamics and policy implications in an innovation arms race". The repository contains the following data sources: 1) anonymized observational data of bin protections used by residents in a suburb of Sydney Australia from 2023 and 2024, 2) observational data...

Flux balance analysis for comparison of CORE with other pathways

Feb 10, 2025

Satanowski, Ari; Marchal, Daniel; He, Hai; Smith, Edward Nicholas; Erb, Tobias, 2025, "Flux balance analysis for comparison of CORE with other pathways", https://doi.org/10.17617/3.V8KJFV, Edmond, V1

Models and python scripts for flux balance analysis (FBA) of a new-to-nature CO2 reduction module, the CORE cycle.

Evolvability

Jan 16, 2025

Michael Barnett, 2024, "Evolvability", https://doi.org/10.17617/3.5PEE52, Edmond, V4

Introduction This record contains data accompanying the paper: Experimental evolution of evolvability Michael Barnett, Lena Zeller, Paul B. Rainey doi:10.1101/2024.05.01.592015 Content of expevolv.zip The folder 'Population B whole-genome seq' contains all fastQ files derived from whole-genome re-sequencing of clones within 'meta-population B' that...

Computational Models for High-Spin Forms of the S2 State of the Oxygen-Evolving Complex

Jan 11, 2025

Pantazis, Dimitrios; Drosou, Maria; Mermigki, Markella Aliki, 2024, "Computational Models for High-Spin Forms of the S2 State of the Oxygen-Evolving Complex", https://doi.org/10.17617/3.YVJ4UJ, Edmond, V2

Computational models for the S2 state of the oxygen-evolving complex of Photosystem II: Input files for multilayer (QM/QM) optimizations, optimized Cartesian coordinates, and results of time-dependent DFT calculations for XAS spectra.

Data and codes from "Causal inference concepts can guide research into the effects of climate on infectious diseases"

Oct 22, 2024

Barrero Guevara, Laura Andrea; Kramer, Sarah; Kurth, Tobias; Domenech de Cellès, Matthieu, 2024, "Data and codes from "Causal inference concepts can guide research into the effects of climate on infectious diseases"", https://doi.org/10.17617/3.9CWN7W, Edmond, V1

Data and R codes associated with the manuscript "Causal inference concepts can guide research into the effects of climate on infectious diseases"

Data and codes from "Estimating the optimal age for infant measles vaccination"

Oct 8, 2024

Goult, Elizabeth; Barrero Guevara, Laura Andrea; Briga, Michael; Domenech de Cellès, Matthieu, 2024, "Data and codes from "Estimating the optimal age for infant measles vaccination"", https://doi.org/10.17617/3.50X626, Edmond, V1

Data and R codes associated with the manuscript "Estimating the optimal age for infant measles vaccination".

Force-field-based energy minimizations of cellulose crystals

Oct 7, 2024

Kullmann, Richard; Weikl, Thomas, 2023, "Force-field-based energy minimizations of cellulose crystals", https://doi.org/10.17617/3.1FPW2C, Edmond, V2

Structures and energy terms for cellulose Ibeta and II crystals composed of 52 chains of cellulose 6-mers, 8-mers, 10-mers, or 12-mers obtained from energy minimizations in two force fields.

Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"

Aug 10, 2024

Bidaye, Salil Sanjay, 2024, "Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"", https://doi.org/10.17617/3.OIX8RZ, Edmond, V2

"Neural circuit mechanisms underlying context-specific halting in Drosophila" by Neha Sapkal, Nino Mancini, Divya Sthanu Kumar, Nico Spiller, Kazuma Murakami, Gianna Vitelli, Benjamin Bargeron, Kate Maier, Katharina Eichler, Gregory S.X.E. Jefferis, Philip K. Shiu, Gabriella R. Sterne and Salil S. Bidaye.

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