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Publication Year: 2025

1 to 10 of 11,089 Results

Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS Jul 1, 2025 Vallet, Marine, 2025, "Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS", https://doi.org/10.17617/3.HJPDTU, Edmond, V1 The algal holobiont, which consists of algae and the bacteria living on it, has developed strategies to handle environmental stresses, such as changes in temperature. The green alga Ulva (Chlorophyta) hosts bacteria that promote algal growth and development, from germlings to mature plants. These associated bacteria produce bioactive compounds, inc...
Analysis of standards with AP-SMALDI-HRMS.zip Jul 1, 2025 - Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS ZIP Archive - 7.7 MB - MD5: 79c47df7a3a66bf68b9b8bc7b4cef4ea
MALDI Ulva Antarctica Extraction Ion Images.zip Jul 1, 2025 - Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS ZIP Archive - 301.4 KB - MD5: 934e1f415db1acefb11f8d2e7b955d87
Mass spectrometry imaging Ulva.zip Jul 1, 2025 - Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS ZIP Archive - 503.8 MB - MD5: c54fd8ba2644605fa3dc775e3ecc8d55
Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean" Jun 27, 2025 Salinas, Mariana, 2025, "Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"", https://doi.org/10.17617/3.LQT15X, Edmond, V1 This dataset provides the Python scripts used for the analysis in the manuscript titled "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean," submitted to Biogeosciences (BG), a Copernicus journal.
drivers_isolating.py Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean" Python Source Code - 4.9 KB - MD5: c0322642b80e285fead078159a186311 This script reconstructs the air-sea CO₂ flux using physical drivers (wind speed, SST, SSS, pCO₂ gradients) following parameterizations from Weiss (1974) and common Schmidt number formulations. It isolates the contributions from solubility, gas transfer velocity, and the ocean-atmosphere pCO₂ gradient.
eddy_detection.py Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean" Python Source Code - 4.3 KB - MD5: dbf8ebd1b59f540422cfd60d3b733a3f This script performs eddy detection using previously computed Okubo-Weiss criterion and vorticity fields. It identifies closed contours where vorticity dominates over shear (i.e., negative values of the Okubo-Weiss criterion) and classifies them as cyclonic or anticyclonic structures based on the mean vorticity within each contour.
filtering_data.py Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean" Python Source Code - 4.5 KB - MD5: 0832d83a4637cd9f51f549c2945effd1 Script to filter signals in oceanographic data using Dask and FFT. It separates frequency components for variables such as co2flux, pco2, etc. Requires a SLURM environment to run on an HPC cluster.
masking_flow_regimes.py Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean" Python Source Code - 6.7 KB - MD5: 9e0bdadc4ffbda98c1f088e130dcf41e This script masks four defined flow regimes—anticyclones, cyclones, periphery, and background based on Okubo-Weiss criteria. It computes the spatial integration of CO2 flux within each regime, considering the spatial area to produce area-weighted averages.
Takahashi_decomposition.py Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean" Python Source Code - 5.2 KB - MD5: b753701f5b6114d1001c6f4c7e21b725 This script performs the Takahashi decomposition to analyze the contributions of different oceanic variables (DIC, alkalinity, salinity, temperature) to changes in surface pCO₂ .

Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS

Jul 1, 2025

Vallet, Marine, 2025, "Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS", https://doi.org/10.17617/3.HJPDTU, Edmond, V1

The algal holobiont, which consists of algae and the bacteria living on it, has developed strategies to handle environmental stresses, such as changes in temperature. The green alga Ulva (Chlorophyta) hosts bacteria that promote algal growth and development, from germlings to mature plants. These associated bacteria produce bioactive compounds, inc...

Analysis of standards with AP-SMALDI-HRMS.zip

Jul 1, 2025 - Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS

ZIP Archive - 7.7 MB -

MALDI Ulva Antarctica Extraction Ion Images.zip

Jul 1, 2025 - Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS

ZIP Archive - 301.4 KB -

Mass spectrometry imaging Ulva.zip

Jul 1, 2025 - Mass spectrometry imaging of Antarctic Ulva and its native microbiome with AP-SMALDI-HRMS

ZIP Archive - 503.8 MB -

Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"

Jun 27, 2025

Salinas, Mariana, 2025, "Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"", https://doi.org/10.17617/3.LQT15X, Edmond, V1

This dataset provides the Python scripts used for the analysis in the manuscript titled "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean," submitted to Biogeosciences (BG), a Copernicus journal.

drivers_isolating.py

Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"

Python Source Code - 4.9 KB -

This script reconstructs the air-sea CO₂ flux using physical drivers (wind speed, SST, SSS, pCO₂ gradients) following parameterizations from Weiss (1974) and common Schmidt number formulations. It isolates the contributions from solubility, gas transfer velocity, and the ocean-atmosphere pCO₂ gradient.

eddy_detection.py

Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"

Python Source Code - 4.3 KB -

This script performs eddy detection using previously computed Okubo-Weiss criterion and vorticity fields. It identifies closed contours where vorticity dominates over shear (i.e., negative values of the Okubo-Weiss criterion) and classifies them as cyclonic or anticyclonic structures based on the mean vorticity within each contour.

filtering_data.py

Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"

Python Source Code - 4.5 KB -

Script to filter signals in oceanographic data using Dask and FFT. It separates frequency components for variables such as co2flux, pco2, etc. Requires a SLURM environment to run on an HPC cluster.

masking_flow_regimes.py

Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"

Python Source Code - 6.7 KB -

This script masks four defined flow regimes—anticyclones, cyclones, periphery, and background based on Okubo-Weiss criteria. It computes the spatial integration of CO2 flux within each regime, considering the spatial area to produce area-weighted averages.

Takahashi_decomposition.py

Jun 27, 2025 - Code for "Mesoscale eddies heterogeneously modulate CO₂ fluxes in eddy-rich regions of the Southern Ocean"

Python Source Code - 5.2 KB -

This script performs the Takahashi decomposition to analyze the contributions of different oceanic variables (DIC, alkalinity, salinity, temperature) to changes in surface pCO₂ .

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