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Subject: Biology Author Organization: Max Planck Institute of Animal Behavior

1 to 10 of 29 Results

Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks" Sep 24, 2024 Brandl, Hanja; Farine, Damien, 2024, "Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"", https://doi.org/10.17617/3.BU7VOY, Edmond, V1 Dataset and code containing behavioural and hormon data of experiment testing effects of stress and stress transmission in groups of zebra finches
Data and code for Immigrant birds use payoff biased social learning in spatially variable environments Sep 19, 2024 Chimento, Michael; Alarcón-Nieto, Gustavo; Aplin, Lucy, 2024, "Data and code for Immigrant birds use payoff biased social learning in spatially variable environments", https://doi.org/10.17617/3.FXC12W, Edmond, V2 The repository contains the data and code to reproduce the study "Immigrant birds use payoff biased social learning in spatially variable environments". Please consult the readme file for file descriptions and locations, and descriptions of variable names. We simulated immigratio...
Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos Aug 22, 2024 Chan, Hoi Hang; Putra, Prasetia; Schupp, Harald; Köchling, Johanna; Straßheim, Jana; Renner, Britta; Schroeder, Julia; Pearse, William D; Nakagawa, Shinichi; Burke, Terry; Griesser, Michael; Meltzer, Andrea; Lubrano, Saverio; Kano, Fumihiro, 2024, "Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos", https://doi.org/10.17617/3.EZNKYV, Edmond, V1 Sample dataset and weights for YOLO-Behaviour framework. Required to run demo code in the documentation. Also provided bounding box datasets for 4 case studies in YOLO format. The human dataset is not included due to privacy concerns. Code: https://github.com/alexhang212/YOLO_Beh...
Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews" Jul 28, 2024 Baldoni, Cecilia, 2024, "Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"", https://doi.org/10.17617/3.XMQBQH, Edmond, V5 Data (.csv)and Models (.R) for the paper "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"
Pretrained models for animal2vec and MeerKAT: A self-supervised transformer for rare-event raw audio input and a large-scale reference dataset for bioacoustics Jul 26, 2024 Schaefer-Zimmermann, Julian; Demartsev, Vlad; Averly, Baptiste; Dhanjal-Adams, Kiran; Duteil, Mathieu; Gall, Gabriella; Faiß, Marius; Johnson-Ulrich, Lily; Stowell, Dan; Manser, Marta; Roch, Marie; Strandburg-Peshkin, Ariana, 2024, "Pretrained models for animal2vec and MeerKAT: A self-supervised transformer for rare-event raw audio input and a large-scale reference dataset for bioacoustics", https://doi.org/10.17617/3.ETPUKU, Edmond, V1 Model weights for animal2vec Please find the accompanying code at our official repository: github.com/livingingroups/animal2vec Here you find the model weights for the pretrained and the finetuned animal2vec model using the MeerKAT dataset. For more information on how to use this...
MeerKAT: Meerkat Kalahari Audio Transcripts Jul 2, 2024 Schaefer-Zimmermann, Julian; Demartsev, Vlad; Averly, Baptiste; Dhanjal-Adams, Kiran; Duteil, Mathieu; Gall, Gabriella; Faiß, Marius; Johnson-Ulrich, Lily; Stowell, Dan; Manser, Marta; Roch, Marie; Strandburg-Peshkin, Ariana, 2024, "MeerKAT: Meerkat Kalahari Audio Transcripts", https://doi.org/10.17617/3.0J0DYB, Edmond, V1 A large-scale reference dataset for bioacoustics Please find the accompanying code at our official repository: github.com/livingingroups/animal2vec [Optional ]You can find the animal2vec model weights using the MeerKAT dataset here. MeerKAT is a 1068h large-scale dataset containi...
E4Warning Bird Species Distribution local predictions Jun 26, 2024 Kamran Safi, 2024, "E4Warning Bird Species Distribution local predictions", https://doi.org/10.17617/3.CMUKKN, Edmond, V1 These folders contain raster files of the four study sites in four European countries (Switzerland, Germany, Spain and Greece), which were created in frame of the E4Warning project (https://www.e4warning.eu). Each raster corresponds to the monthly prediction of habitat suitabilit...
Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation Jun 13, 2024 Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V1 This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: htt...
3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture May 7, 2024 naik, Hemal; Chan, Alex Hoi Hang; Yang, Junran; Delacoux, Mathilde; Couzin, D. Iain; Kano, Fumihiro; Nagy, Mate, 2023, "3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture", https://doi.org/10.17617/3.HPBBC7, Edmond, V6 The 3DPOP dataset is a large scale 2D to 3D posture, identity and trajectory dataset for freely moving pigeons. We use marker-based motion tracking to first track precise head and body position and orientation for multiple individuals, then propagated custom keypoints based on th...
Code and Data for `A new approach to geostatistical synthesis of historical records reveals capuchin spatial responses to climate and demographic change` May 4, 2024 Barrett, Brendan James; Jacobson, Odd; Perry, Susan; Finerty, Genevieve Erin; Tiedeman, Kate; Crofoot, Margaret, 2024, "Code and Data for `A new approach to geostatistical synthesis of historical records reveals capuchin spatial responses to climate and demographic change`", https://doi.org/10.17617/3.HUKMS6, Edmond, V3 Code and Data for Archives of Animal Movement: Reviving Historic Data to Safeguard Insights into Global and Demographic Change.

Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"

Sep 24, 2024

Brandl, Hanja; Farine, Damien, 2024, "Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"", https://doi.org/10.17617/3.BU7VOY, Edmond, V1

Dataset and code containing behavioural and hormon data of experiment testing effects of stress and stress transmission in groups of zebra finches

Data and code for Immigrant birds use payoff biased social learning in spatially variable environments

Sep 19, 2024

Chimento, Michael; Alarcón-Nieto, Gustavo; Aplin, Lucy, 2024, "Data and code for Immigrant birds use payoff biased social learning in spatially variable environments", https://doi.org/10.17617/3.FXC12W, Edmond, V2

The repository contains the data and code to reproduce the study "Immigrant birds use payoff biased social learning in spatially variable environments". Please consult the readme file for file descriptions and locations, and descriptions of variable names. We simulated immigratio...

Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos

Aug 22, 2024

Chan, Hoi Hang; Putra, Prasetia; Schupp, Harald; Köchling, Johanna; Straßheim, Jana; Renner, Britta; Schroeder, Julia; Pearse, William D; Nakagawa, Shinichi; Burke, Terry; Griesser, Michael; Meltzer, Andrea; Lubrano, Saverio; Kano, Fumihiro, 2024, "Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos", https://doi.org/10.17617/3.EZNKYV, Edmond, V1

Sample dataset and weights for YOLO-Behaviour framework. Required to run demo code in the documentation. Also provided bounding box datasets for 4 case studies in YOLO format. The human dataset is not included due to privacy concerns. Code: https://github.com/alexhang212/YOLO_Beh...

Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"

Jul 28, 2024

Baldoni, Cecilia, 2024, "Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"", https://doi.org/10.17617/3.XMQBQH, Edmond, V5

Data (.csv)and Models (.R) for the paper "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"

Pretrained models for animal2vec and MeerKAT: A self-supervised transformer for rare-event raw audio input and a large-scale reference dataset for bioacoustics

Jul 26, 2024

Schaefer-Zimmermann, Julian; Demartsev, Vlad; Averly, Baptiste; Dhanjal-Adams, Kiran; Duteil, Mathieu; Gall, Gabriella; Faiß, Marius; Johnson-Ulrich, Lily; Stowell, Dan; Manser, Marta; Roch, Marie; Strandburg-Peshkin, Ariana, 2024, "Pretrained models for animal2vec and MeerKAT: A self-supervised transformer for rare-event raw audio input and a large-scale reference dataset for bioacoustics", https://doi.org/10.17617/3.ETPUKU, Edmond, V1

Model weights for animal2vec Please find the accompanying code at our official repository: github.com/livingingroups/animal2vec Here you find the model weights for the pretrained and the finetuned animal2vec model using the MeerKAT dataset. For more information on how to use this...

MeerKAT: Meerkat Kalahari Audio Transcripts

Jul 2, 2024

Schaefer-Zimmermann, Julian; Demartsev, Vlad; Averly, Baptiste; Dhanjal-Adams, Kiran; Duteil, Mathieu; Gall, Gabriella; Faiß, Marius; Johnson-Ulrich, Lily; Stowell, Dan; Manser, Marta; Roch, Marie; Strandburg-Peshkin, Ariana, 2024, "MeerKAT: Meerkat Kalahari Audio Transcripts", https://doi.org/10.17617/3.0J0DYB, Edmond, V1

A large-scale reference dataset for bioacoustics Please find the accompanying code at our official repository: github.com/livingingroups/animal2vec [Optional ]You can find the animal2vec model weights using the MeerKAT dataset here. MeerKAT is a 1068h large-scale dataset containi...

E4Warning Bird Species Distribution local predictions

Jun 26, 2024

Kamran Safi, 2024, "E4Warning Bird Species Distribution local predictions", https://doi.org/10.17617/3.CMUKKN, Edmond, V1

These folders contain raster files of the four study sites in four European countries (Switzerland, Germany, Spain and Greece), which were created in frame of the E4Warning project (https://www.e4warning.eu). Each raster corresponds to the monthly prediction of habitat suitabilit...

Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation

Jun 13, 2024

Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V1

This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: htt...

3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture

May 7, 2024

naik, Hemal; Chan, Alex Hoi Hang; Yang, Junran; Delacoux, Mathilde; Couzin, D. Iain; Kano, Fumihiro; Nagy, Mate, 2023, "3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture", https://doi.org/10.17617/3.HPBBC7, Edmond, V6

The 3DPOP dataset is a large scale 2D to 3D posture, identity and trajectory dataset for freely moving pigeons. We use marker-based motion tracking to first track precise head and body position and orientation for multiple individuals, then propagated custom keypoints based on th...

Code and Data for `A new approach to geostatistical synthesis of historical records reveals capuchin spatial responses to climate and demographic change`

May 4, 2024

Barrett, Brendan James; Jacobson, Odd; Perry, Susan; Finerty, Genevieve Erin; Tiedeman, Kate; Crofoot, Margaret, 2024, "Code and Data for `A new approach to geostatistical synthesis of historical records reveals capuchin spatial responses to climate and demographic change`", https://doi.org/10.17617/3.HUKMS6, Edmond, V3

Code and Data for Archives of Animal Movement: Reviving Historic Data to Safeguard Insights into Global and Demographic Change.

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