1 to 10 of 39 Results
Gonthier, Julien, 2024, "Lab-source µCT quantitative imaging of silica aerogels during evaporative drying", https://doi.org/10.17617/3.OYI3T9, Edmond, V2
This repository contains the raw data, processed data and python scripts related to the quantitative imaging and modeling of in-operando X-ray micro-computed tomography (µCT) measurements applied to the evaporative drying of silica aerogels. The dataset are linked to two publicat... |
Apr 4, 2024
Heller, Anna-Dorothea; Valleriani, Angelo; Cipitria, Dr. Amaia, 2024, "Phase diagrams of bone remodeling using a 3D stochastic cellular automaton", https://doi.org/10.17617/3.FNXOA3, Edmond, V1
We propose a 3D stochastic cellular automaton model, governed by evolutionary game theory, to simulate bone remodeling dynamics. The model includes four voxel states: Formation, Quiescence, Resorption, and Environment. We simulate the Resorption and Formation processes on separat... |
Mar 26, 2024
Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1
Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses... |
Feb 13, 2024
Delbianco, Martina, 2024, "Source data for "Dissecting the conformational stability of a glycan hairpin"", https://doi.org/10.17617/3.ZCGFCC, Edmond, V1
experimental; simulation/modelling |
Codutti, Agnese; Charsooghi, Mohammad; Marx, Konrad; Cerdá Doñate, Elisa; Munoz, Omar; Zaslansky, Paul; Teletzki, Vitali; Robinson, Tom; Faivre, Damien; Klumpp, Stefan, 2024, "Escape problem of magnetotactic bacteria - Physiological magnetic field strength help magnetotactic bacteria navigate in simulated sediment", https://doi.org/10.17617/3.KWU1HZ, Edmond, V1
Bacterial motility is typically studied in bulk solution, while their natural habitats often are complex environments. Here, we produced microfluidic channels that contained sediment-mimicking obstacles to study swimming of magnetotactic bacteria in a near-realistic environment t... |
Jan 24, 2024
Young, Sarah; Heller, Anna-Dorothea; Garske, Daniela; Rummler, Maximilian; Qian, Victoria; Ellinghaus, Agnes; Duda, Georg; Willie, Bettina; Grüneboom, Anika; Cipitria, Dr. Amaia, 2024, "From breast cancer cell homing to the onset of early bone metastasis: the role of bone (re)modeling in early lesion formation", https://doi.org/10.17617/3.5QKDMH, Edmond, V1
Breast cancer often metastasizes to bone causing osteolytic lesions. Structural and biophysical changes are rarely studied, yet are hypothesized to influence metastatic progression. Here, we developed a mouse model of early bone metastasis and multimodal 3D imaging to quantify ca... |
Jan 8, 2024
Delbianco, Martina, 2024, "Source data for "Toward glycan foldamers and programmable assemblies"", https://doi.org/10.17617/3.79M9Z6, Edmond, V1
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Dec 17, 2023
Kullmann, Richard; Weikl, Thomas, 2023, "MD simulations and energy minimizations of cellulose crystals", https://doi.org/10.17617/3.1FPW2C, Edmond, V1
Microsecond-long simulations trajectories and results from energy minimizations for cellulose Ibeta and II crystals composed of 52 chains of cellulose 6-mers, 8-mers, 10-mers, or 12-mers. |
Oct 11, 2023
Delbianco, Martina, 2023, "Source data for "Controlling the assembly of cellulose-based oligosaccharides through sequence modifications"", https://doi.org/10.17617/3.RRVHKQ, Edmond, V1
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Dimova, Rumiana, 2023, "Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches", https://doi.org/10.17617/3.CWOZQO, Edmond, V1
Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science |
