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Study Type: simulation/modelling Subject: Biology

1 to 10 of 28 Results

E4Warning Bird Species Distribution local predictions Jun 26, 2024 Kamran Safi, 2024, "E4Warning Bird Species Distribution local predictions", https://doi.org/10.17617/3.CMUKKN, Edmond, V1 These folders contain raster files of the four study sites in four European countries (Switzerland, Germany, Spain and Greece), which were created in frame of the E4Warning project (https://www.e4warning.eu). Each raster corresponds to the monthly prediction of habitat suitabilit...
Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila" Jun 12, 2024 Bidaye, Salil Sanjay, 2024, "Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"", https://doi.org/10.17617/3.OIX8RZ, Edmond, V1 "Neural circuit mechanisms underlying context-specific halting in Drosophila" by Neha Sapkal, Nino Mancini, Divya Sthanu Kumar, Nico Spiller, Kazuma Murakami, Gianna Vitelli, Benjamin Bargeron, Kate Maier, Katharina Eichler, Gregory S.X.E. Jefferis, Philip K. Shiu, Gabriella R. S...
ISWI1 complex proteins facilitate developmental genome editing in Paramecium Jun 12, 2024 Singh, Aditi; Häußermann, Lilia; Swart , C. Estienne, 2023, "ISWI1 complex proteins facilitate developmental genome editing in Paramecium", https://doi.org/10.17617/3.ZBOLU8, Edmond, V3
Data and R codes from "Pertussis vaccines, epidemiology and evolution" May 15, 2024 Domenech de Celles, Matthieu; Rohani, Pejman, 2024, "Data and R codes from "Pertussis vaccines, epidemiology and evolution"", https://doi.org/10.17617/3.A1KMUB, Edmond, V1 Data and R codes from the review article, "Pertussis vaccines, epidemiology and evolution", published in Nature Reviews Microbiology.
Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control" Apr 12, 2024 Kramer, Sarah C, 2022, "Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control"", https://doi.org/10.17617/3.TBOPCK, Edmond, V2 Code to infer the strength and duration of interactions between flu and RSV
A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length. Mar 26, 2024 Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1 Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses...
Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission Mar 20, 2024 Chimento, Michael, 2024, "Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission", https://doi.org/10.17617/3.U3NSZT, Edmond, V2 These are the data and code to reproduce the simulations and figures from the manuscript "The contribution of movement to social network structure and spreading dynamics under simple and complex transmission" by Michael Chimento and Damien Farine. This is a simulation study where...
Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus Feb 20, 2024 Girard, Martin; Olvera de la Cruz, Monica; Marko, John; Erbas, Aykut, 2024, "Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus", https://doi.org/10.17617/3.P08YSZ, Edmond, V1 Dataset for ring polymers under confinement as a model for chromatin in the cell nucleus
Data and Code for Understanding the Role of Naive Learners in Cultural Change Jan 30, 2024 Chimento, Michael, 2023, "Data and Code for Understanding the Role of Naive Learners in Cultural Change", https://doi.org/10.17617/3.RLRJZC, Edmond, V2 These are the data and code to reproduce the simulations and figures from the manuscript "Understanding the Role of Naive Learners in Cultural Change" by Michael Chimento and Lucy Aplin. This is a simulation study where both social transmission and reinforcement learning are comb...
Supplementary Material for "Performance Review of Retraining and Transfer Learning of DeLTA 2.0 for Image Segmentation for Pseudomonas fluorescens SBW25" Dec 18, 2023 Fortmann-Grote, Carsten; Gericke, Beate Constanze; Werth, Sören; Degner, Finn; Hüttmann, Tom, 2023, "Supplementary Material for "Performance Review of Retraining and Transfer Learning of DeLTA 2.0 for Image Segmentation for Pseudomonas fluorescens SBW25"", https://doi.org/10.17617/3.MCK0KK, Edmond, V1 This upload contains all raw data, trained tensorflow models, and python code used for training and validation of deep learning image segmentation as described in the forthcoming paper "Performance Review of Retraining and Transfer Learning of DeLTA 2.0 for Image Segmentation for...

E4Warning Bird Species Distribution local predictions

Jun 26, 2024

Kamran Safi, 2024, "E4Warning Bird Species Distribution local predictions", https://doi.org/10.17617/3.CMUKKN, Edmond, V1

These folders contain raster files of the four study sites in four European countries (Switzerland, Germany, Spain and Greece), which were created in frame of the E4Warning project (https://www.e4warning.eu). Each raster corresponds to the monthly prediction of habitat suitabilit...

Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"

Jun 12, 2024

Bidaye, Salil Sanjay, 2024, "Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"", https://doi.org/10.17617/3.OIX8RZ, Edmond, V1

"Neural circuit mechanisms underlying context-specific halting in Drosophila" by Neha Sapkal, Nino Mancini, Divya Sthanu Kumar, Nico Spiller, Kazuma Murakami, Gianna Vitelli, Benjamin Bargeron, Kate Maier, Katharina Eichler, Gregory S.X.E. Jefferis, Philip K. Shiu, Gabriella R. S...

ISWI1 complex proteins facilitate developmental genome editing in Paramecium

Jun 12, 2024

Singh, Aditi; Häußermann, Lilia; Swart , C. Estienne, 2023, "ISWI1 complex proteins facilitate developmental genome editing in Paramecium", https://doi.org/10.17617/3.ZBOLU8, Edmond, V3

Data and R codes from "Pertussis vaccines, epidemiology and evolution"

May 15, 2024

Domenech de Celles, Matthieu; Rohani, Pejman, 2024, "Data and R codes from "Pertussis vaccines, epidemiology and evolution"", https://doi.org/10.17617/3.A1KMUB, Edmond, V1

Data and R codes from the review article, "Pertussis vaccines, epidemiology and evolution", published in Nature Reviews Microbiology.

Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control"

Apr 12, 2024

Kramer, Sarah C, 2022, "Code for "Characterizing the epidemiological interactions between influenza and respiratory syncytial viruses and their implications for disease control"", https://doi.org/10.17617/3.TBOPCK, Edmond, V2

Code to infer the strength and duration of interactions between flu and RSV

A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.

Mar 26, 2024

Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1

Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses...

Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission

Mar 20, 2024

Chimento, Michael, 2024, "Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission", https://doi.org/10.17617/3.U3NSZT, Edmond, V2

These are the data and code to reproduce the simulations and figures from the manuscript "The contribution of movement to social network structure and spreading dynamics under simple and complex transmission" by Michael Chimento and Damien Farine. This is a simulation study where...

Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus

Feb 20, 2024

Girard, Martin; Olvera de la Cruz, Monica; Marko, John; Erbas, Aykut, 2024, "Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus", https://doi.org/10.17617/3.P08YSZ, Edmond, V1

Dataset for ring polymers under confinement as a model for chromatin in the cell nucleus

Data and Code for Understanding the Role of Naive Learners in Cultural Change

Jan 30, 2024

Chimento, Michael, 2023, "Data and Code for Understanding the Role of Naive Learners in Cultural Change", https://doi.org/10.17617/3.RLRJZC, Edmond, V2

These are the data and code to reproduce the simulations and figures from the manuscript "Understanding the Role of Naive Learners in Cultural Change" by Michael Chimento and Lucy Aplin. This is a simulation study where both social transmission and reinforcement learning are comb...

Supplementary Material for "Performance Review of Retraining and Transfer Learning of DeLTA 2.0 for Image Segmentation for Pseudomonas fluorescens SBW25"

Dec 18, 2023

Fortmann-Grote, Carsten; Gericke, Beate Constanze; Werth, Sören; Degner, Finn; Hüttmann, Tom, 2023, "Supplementary Material for "Performance Review of Retraining and Transfer Learning of DeLTA 2.0 for Image Segmentation for Pseudomonas fluorescens SBW25"", https://doi.org/10.17617/3.MCK0KK, Edmond, V1

This upload contains all raw data, trained tensorflow models, and python code used for training and validation of deep learning image segmentation as described in the forthcoming paper "Performance Review of Retraining and Transfer Learning of DeLTA 2.0 for Image Segmentation for...

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