1 to 10 of 11 Results
Mar 26, 2024
Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1
Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses... |
Feb 20, 2024
Girard, Martin; Olvera de la Cruz, Monica; Marko, John; Erbas, Aykut, 2024, "Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus", https://doi.org/10.17617/3.P08YSZ, Edmond, V1
Dataset for ring polymers under confinement as a model for chromatin in the cell nucleus |
Dec 17, 2023
Kullmann, Richard; Weikl, Thomas, 2023, "MD simulations and energy minimizations of cellulose crystals", https://doi.org/10.17617/3.1FPW2C, Edmond, V1
Microsecond-long simulations trajectories and results from energy minimizations for cellulose Ibeta and II crystals composed of 52 chains of cellulose 6-mers, 8-mers, 10-mers, or 12-mers. |
Oct 7, 2023
Anggara, Kelvin, 2023, "STM images and DFT structures of glycoconjugates", https://doi.org/10.17617/3.3F5JPU, Edmond, V2
Raw STM images of glycans and glycoconjugates were given in the SXM format outputted directly from the Nanonis control software, which can be opened using WSXM or Gwyddion. Computed structures were given in XYZ format, which can be opened by common molecular modeling software suc... |
Dimova, Rumiana, 2023, "Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches", https://doi.org/10.17617/3.CWOZQO, Edmond, V1
Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science |
Steiert, Frederik; Schultz, Peter; Höfinger, Siegfried; Müller, Thomas; Schwille, Petra; Weidemann, Thomas, 2022, "Ratiometric Segmentation Script", https://doi.org/10.17617/3.YDSJ2C, Edmond, V2
ImageJ plugin for cell membrane segmentation of multi-channel confocal images, written by Giovanni Cardone (MPI of Biochemistry, Imaging Facility). |
Taïeb, Hubert M.; Herment, Guillaume; Robison, Tom; Cipitria, Amaia, 2022, "Effect of capillary fluid flow on single cancer cell cycle dynamics, motility, volume and morphology", https://doi.org/10.17617/3.658NWI, Edmond, V1
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Nov 21, 2022
Rozycki, Bartosz; Weikl, Thomas; Pettmann, Johannes; van der Merwe, P. Anton; Dushek, Omer, 2022, "Data from structure-based coarse-grained MD simulations of TCR/pMHC unbinding for a large range of pulling velocities", https://doi.org/10.17617/3.2VLJ6X, Edmond, V1
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Aug 9, 2022
Antonschmidt, Leif; Dirk Matthes; Rıza Dervişoğlu; Benedikt Frieg; Christian Dienemann; Andrei Leonov; Evgeny Nimerovsky; Vrinda Sant; Sergey Ryazanov; Armin Giese; Gunnar Schröder; Stefan Becker; Bert L. de Groot; Christian Griesinger; Loren B. Andreas, 2022, "The clinical drug candidate anle138b binds in a cavity of lipidic α-synuclein fibrils", https://doi.org/10.17617/3.9C6TEW, Edmond, V1
This dataset includes NMR spectra raw data generated in this study, Negative stain EM micrographs for αSyn fibrils in the presence of anle138b and mass spectrometry data for the synthesis of selectively labelled α-synuclein and 13C- and 15N-labelled anle138b, respectively. Solid-... |
May 31, 2022
Yan, Victoria Tianjing; Narayanan, Arjun, 2022, "Dataset for: A condensate dynamic instability orchestrates actomyosin cortex activation", https://doi.org/10.17617/3.PIRFA2, Edmond, V1
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