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Study Type: experimental Publication Year: 2023 Subject: Biology

11 to 20 of 50 Results

Cell free expression in proteinosomes prepared from native protein-PNIPAAm conjugates Nov 1, 2023 Mengfei Gao; Dishi Wang; Michaela Wilsch-Bräuninger; Weihua Leng; Jonathan Schulte; Nina Morgner; Tang, T-Y Dora; Dietmar Appelhans, 2023, "Cell free expression in proteinosomes prepared from native protein-PNIPAAm conjugates", https://doi.org/10.17617/3.4OIA9H, Edmond, V2 Towards the goal of building synthetic cells from the bottom-up, the establishment of micrometer-sized compartments that contain and support cell free transcription and translation that couple cellular structure to function is of critical importance. Proteinosomes, formed from cr...
The COMBO window: A chronic cranial implant for multiscale circuit interrogation in mice Oct 24, 2023 Mace, Emilie, 2023, "The COMBO window: A chronic cranial implant for multiscale circuit interrogation in mice", https://doi.org/10.17617/3.5KYYHK, Edmond, V1 This dataset contains the raw data associated with the following preprint : https://www.biorxiv.org/content/10.1101/2023.10.02.560470v1
FACS run data from Loxodes striatus nuclei separation for Western blots Oct 18, 2023 Seah, Kwee Boon Brandon; Swart, Estienne, 2023, "FACS run data from Loxodes striatus nuclei separation for Western blots", https://doi.org/10.17617/3.GZNWOJ, Edmond, V1 Run data from fluorescence activated cell sorting (FACS) of micro- and macronuclei by FACS from cell lysate of Loxodes striatus ciliates. See README.md for details.
FACS run data from Loxodes magnus nuclei separation for Western blots Oct 18, 2023 Seah, Kwee Boon Brandon; Swart, Estienne, 2023, "FACS run data from Loxodes magnus nuclei separation for Western blots", https://doi.org/10.17617/3.3TQWJX, Edmond, V1 Run data from fluorescence activated cell sorting (FACS) of micro- and macronuclei by FACS from cell lysate of Loxodes magnus ciliates. See README.md for details.
Western blots of Loxodes ciliate nuclei for histones and histone modifications Oct 18, 2023 Seah, Kwee Boon Brandon; Singh, Aditi; Emmerich, Christiane; Swart, Estienne, 2023, "Western blots of Loxodes ciliate nuclei for histones and histone modifications", https://doi.org/10.17617/3.0DVGMU, Edmond, V1 See README.md for more information
Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA Oct 18, 2023 Seah, Kwee Boon Brandon; Emmerich, Christiane; Singh, Aditi; Swart, Estienne, 2023, "Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA", https://doi.org/10.17617/3.VWAUYE, Edmond, V1 Localization of histones, histone modifications, and 6mA base modification to specific nuclei types in Loxodes ciliates by immunofluorescence and imaging of whole cells. This serves to verify results from Western blotting of isolated nuclei populations sorted by FACS. See README....
FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing Oct 18, 2023 Seah, Kwee Boon Brandon; Swart, Estienne Carl, 2023, "FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing", https://doi.org/10.17617/3.Y18RPV, Edmond, V1 Run data from FACS purification of Loxodes magnus macro- and micronuclei for nucleosomal sequencing. See README.md for details
Supplementary videos for "Cytosolic sorting platform complexes serve as a shuttle for effectors of the type III secretion system" Oct 10, 2023 Diepold, Andreas, 2023, "Supplementary videos for "Cytosolic sorting platform complexes serve as a shuttle for effectors of the type III secretion system"", https://doi.org/10.17617/3.HMABQ2, Edmond, V1 Examplary raw microscopy data of single particle tracking photoactivated localization microscopy for PAmCherry-SctQ: (i) strain delta-effectors, non-secreting conditions (d_eff_nscr.tif) (ii) wild-type strain, non-secreting conditions (WT_nscr.tif) (iii) wild-type strain, secreti...
A radiation of Psylliodes flea beetles on Brassicaceae is associated with the evolution of specific detoxification enzymes Oct 8, 2023 Gikonyo, Matilda W.; Ahn, Seung-Joon; Biondi, Maurizio; Fritzlar, Frank; Okamura, Yu; Vogel, Heiko; Köllner, Tobias G.; Sen, Ismail; Hernández-Teixidor, David; Lee, Chi-Feng; Letsch, Harald; Beran, Franziska, 2023, "A radiation of Psylliodes flea beetles on Brassicaceae is associated with the evolution of specific detoxification enzymes", https://doi.org/10.17617/3.UYO1D2, Edmond, V1 Datasets for: A radiation of Psylliodes flea beetles on Brassicaceae is associated with the evolution of specific detoxification enzymes. Datasets are sorted by Figure/Table/Analysis and contain all sequences, sequence alignments and Input files.
STM images and DFT structures of glycoconjugates Oct 7, 2023 Anggara, Kelvin, 2023, "STM images and DFT structures of glycoconjugates", https://doi.org/10.17617/3.3F5JPU, Edmond, V2 Raw STM images of glycans and glycoconjugates were given in the SXM format outputted directly from the Nanonis control software, which can be opened using WSXM or Gwyddion. Computed structures were given in XYZ format, which can be opened by common molecular modeling software suc...

Cell free expression in proteinosomes prepared from native protein-PNIPAAm conjugates

Nov 1, 2023

Mengfei Gao; Dishi Wang; Michaela Wilsch-Bräuninger; Weihua Leng; Jonathan Schulte; Nina Morgner; Tang, T-Y Dora; Dietmar Appelhans, 2023, "Cell free expression in proteinosomes prepared from native protein-PNIPAAm conjugates", https://doi.org/10.17617/3.4OIA9H, Edmond, V2

Towards the goal of building synthetic cells from the bottom-up, the establishment of micrometer-sized compartments that contain and support cell free transcription and translation that couple cellular structure to function is of critical importance. Proteinosomes, formed from cr...

The COMBO window: A chronic cranial implant for multiscale circuit interrogation in mice

Oct 24, 2023

Mace, Emilie, 2023, "The COMBO window: A chronic cranial implant for multiscale circuit interrogation in mice", https://doi.org/10.17617/3.5KYYHK, Edmond, V1

This dataset contains the raw data associated with the following preprint : https://www.biorxiv.org/content/10.1101/2023.10.02.560470v1

FACS run data from Loxodes striatus nuclei separation for Western blots

Oct 18, 2023

Seah, Kwee Boon Brandon; Swart, Estienne, 2023, "FACS run data from Loxodes striatus nuclei separation for Western blots", https://doi.org/10.17617/3.GZNWOJ, Edmond, V1

Run data from fluorescence activated cell sorting (FACS) of micro- and macronuclei by FACS from cell lysate of Loxodes striatus ciliates. See README.md for details.

FACS run data from Loxodes magnus nuclei separation for Western blots

Oct 18, 2023

Seah, Kwee Boon Brandon; Swart, Estienne, 2023, "FACS run data from Loxodes magnus nuclei separation for Western blots", https://doi.org/10.17617/3.3TQWJX, Edmond, V1

Run data from fluorescence activated cell sorting (FACS) of micro- and macronuclei by FACS from cell lysate of Loxodes magnus ciliates. See README.md for details.

Western blots of Loxodes ciliate nuclei for histones and histone modifications

Oct 18, 2023

Seah, Kwee Boon Brandon; Singh, Aditi; Emmerich, Christiane; Swart, Estienne, 2023, "Western blots of Loxodes ciliate nuclei for histones and histone modifications", https://doi.org/10.17617/3.0DVGMU, Edmond, V1

See README.md for more information

Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA

Oct 18, 2023

Seah, Kwee Boon Brandon; Emmerich, Christiane; Singh, Aditi; Swart, Estienne, 2023, "Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA", https://doi.org/10.17617/3.VWAUYE, Edmond, V1

Localization of histones, histone modifications, and 6mA base modification to specific nuclei types in Loxodes ciliates by immunofluorescence and imaging of whole cells. This serves to verify results from Western blotting of isolated nuclei populations sorted by FACS. See README....

FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing

Oct 18, 2023

Seah, Kwee Boon Brandon; Swart, Estienne Carl, 2023, "FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing", https://doi.org/10.17617/3.Y18RPV, Edmond, V1

Run data from FACS purification of Loxodes magnus macro- and micronuclei for nucleosomal sequencing. See README.md for details

Supplementary videos for "Cytosolic sorting platform complexes serve as a shuttle for effectors of the type III secretion system"

Oct 10, 2023

Diepold, Andreas, 2023, "Supplementary videos for "Cytosolic sorting platform complexes serve as a shuttle for effectors of the type III secretion system"", https://doi.org/10.17617/3.HMABQ2, Edmond, V1

Examplary raw microscopy data of single particle tracking photoactivated localization microscopy for PAmCherry-SctQ: (i) strain delta-effectors, non-secreting conditions (d_eff_nscr.tif) (ii) wild-type strain, non-secreting conditions (WT_nscr.tif) (iii) wild-type strain, secreti...

A radiation of Psylliodes flea beetles on Brassicaceae is associated with the evolution of specific detoxification enzymes

Oct 8, 2023

Gikonyo, Matilda W.; Ahn, Seung-Joon; Biondi, Maurizio; Fritzlar, Frank; Okamura, Yu; Vogel, Heiko; Köllner, Tobias G.; Sen, Ismail; Hernández-Teixidor, David; Lee, Chi-Feng; Letsch, Harald; Beran, Franziska, 2023, "A radiation of Psylliodes flea beetles on Brassicaceae is associated with the evolution of specific detoxification enzymes", https://doi.org/10.17617/3.UYO1D2, Edmond, V1

Datasets for: A radiation of Psylliodes flea beetles on Brassicaceae is associated with the evolution of specific detoxification enzymes. Datasets are sorted by Figure/Table/Analysis and contain all sequences, sequence alignments and Input files.

STM images and DFT structures of glycoconjugates

Oct 7, 2023

Anggara, Kelvin, 2023, "STM images and DFT structures of glycoconjugates", https://doi.org/10.17617/3.3F5JPU, Edmond, V2

Raw STM images of glycans and glycoconjugates were given in the SXM format outputted directly from the Nanonis control software, which can be opened using WSXM or Gwyddion. Computed structures were given in XYZ format, which can be opened by common molecular modeling software suc...

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