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Study Type: experimental Subject: Biology Subject: Physics

1 to 10 of 15 Results

Injury-induced electrochemical coupling triggers regenerative cell proliferation - DATA Apr 29, 2025 Nerli, Elisa; Liu, Jinghui, 2025, "Injury-induced electrochemical coupling triggers regenerative cell proliferation - DATA", https://doi.org/10.17617/3.6WBOSZ, Edmond, V1 Data for the paper "Injury-induced electrochemical coupling triggers regenerative cell proliferation"
Energy-loss reconstructions of rabbit RyR1 reconstructed by REEL analysis Oct 9, 2024 Pfeil-Gardiner, Olivia; Murphy, Bonnie, 2024, "Energy-loss reconstructions of rabbit RyR1 reconstructed by REEL analysis", https://doi.org/10.17617/3.X1R0AQ, Edmond, V1 Dataset of electron energy-loss reconstructions which were created by REEL analysis. Maps are labelled by energy-loss in eV. They cover the range from -7.5 eV to 729.75 eV in 0.75 eV steps. A scaling factor of 532/515 yields more accurate energy-loss values. Low-pass filtering is advantageous for display. The sample is Ryanodine Receptor 1, purifie...
Energy-loss reconstructions of worm hemoglobin (lumbricus terrestris erythrocruorin) reconstructed by REEL analysis Oct 9, 2024 Pfeil-Gardiner, Olivia; Murphy, Bonnie, 2024, "Energy-loss reconstructions of worm hemoglobin (lumbricus terrestris erythrocruorin) reconstructed by REEL analysis", https://doi.org/10.17617/3.AUERWM, Edmond, V1 Dataset of electron energy-loss reconstructions which were created by REEL analysis. Maps are labelled by energy-loss in eV. They cover the range from -7.5 eV to 729.75 eV in 0.75 eV steps. A scaling factor of 532/515 yields more accurate energy-loss values. Low-pass filtering is advantageous for display. The sample is worm hemoglobin (erythrocruor...
Library of optimal control pulse sequences for biomolecular NMR spectroscopy Aug 2, 2024 Joseph, David; Griesinger, Christian, 2024, "Library of optimal control pulse sequences for biomolecular NMR spectroscopy", https://doi.org/10.17617/3.CBOUXH, Edmond, V1 This data set is part of the publication Library of optimal control pulse sequences for biomolecular NMR spectroscopy (manuscript in preparation). by D. Joseph and C. Griesinger. All reported pulse sequence codes and the necessary parameter files and additional OC pulse shapes are provided to reproduce the results on a Bruker Avance Neo 1200 MHz us...
Investigation of bSSFP frequency response changes during a functional experiment at 9.4 T Apr 19, 2024 Iyyappan Valsala, Praveen, 2024, "Investigation of bSSFP frequency response changes during a functional experiment at 9.4 T", https://doi.org/10.17617/3.ZRZUBE, Edmond, V1 All data was acquired using an accelerated 3D stack-of-spirals sequence at a Siemens Magnetom 9. 4 T human MRI scanner. A resting-state phase-cycling experiment to assess data quality and two functional phase-cycling experiments with temporally shifted paradigm (see Figure 4) to obtain SSFP profiles for active and resting conditions. An additional...
STM images and DFT structures of glycoconjugates Oct 7, 2023 Anggara, Kelvin, 2023, "STM images and DFT structures of glycoconjugates", https://doi.org/10.17617/3.3F5JPU, Edmond, V2 Raw STM images of glycans and glycoconjugates were given in the SXM format outputted directly from the Nanonis control software, which can be opened using WSXM or Gwyddion. Computed structures were given in XYZ format, which can be opened by common molecular modeling software such as VMD, VESTA, Avogadro, ChimeraX, etc.
MINSTED tracking of single biomolecules Sep 26, 2023 Scheiderer, Lukas; von der Emde, Henrik; Hesselink, Mira; Weber, Michael; Hell, Stefan, 2023, "MINSTED tracking of single biomolecules", https://doi.org/10.17617/3.YIQGGB, Edmond, V1 We show that MINSTED localization, a method whereby the position of a fluorophore is identified with precisely controlled beams of a STED microscope, tracks fluorophores and hence labeled biomolecules with nanometer/millisecond spatio-temporal precision. By updating the position for each detected photon, MINSTED recognizes fluorophore steps of 16 n...
Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches Aug 25, 2023 Dimova, Rumiana, 2023, "Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches", https://doi.org/10.17617/3.CWOZQO, Edmond, V1 Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science
FUS Air-Buffer Figure Data Mar 3, 2023 Parekh, Sapun, 2023, "FUS Air-Buffer Figure Data", https://doi.org/10.17617/3.PUBRKR, Edmond, V2
MINSTED nanoscopy enters the Ångström localization range Dec 1, 2022 von der Emde, Henrik, 2022, "MINSTED nanoscopy enters the Ångström localization range", https://doi.org/10.17617/3.0YVCIK, Edmond, V1 Super-resolution techniques have achieved localization precisions in the nanometer regime. Here we report all-optical, room temperature localization of fluorophores with precision in the Ångström range. We built on the concept of MINSTED nanoscopy where precision is increased by encircling the fluorophore with the low-intensity central region of a...

Injury-induced electrochemical coupling triggers regenerative cell proliferation - DATA

Apr 29, 2025

Nerli, Elisa; Liu, Jinghui, 2025, "Injury-induced electrochemical coupling triggers regenerative cell proliferation - DATA", https://doi.org/10.17617/3.6WBOSZ, Edmond, V1

Data for the paper "Injury-induced electrochemical coupling triggers regenerative cell proliferation"

Energy-loss reconstructions of rabbit RyR1 reconstructed by REEL analysis

Oct 9, 2024

Pfeil-Gardiner, Olivia; Murphy, Bonnie, 2024, "Energy-loss reconstructions of rabbit RyR1 reconstructed by REEL analysis", https://doi.org/10.17617/3.X1R0AQ, Edmond, V1

Dataset of electron energy-loss reconstructions which were created by REEL analysis. Maps are labelled by energy-loss in eV. They cover the range from -7.5 eV to 729.75 eV in 0.75 eV steps. A scaling factor of 532/515 yields more accurate energy-loss values. Low-pass filtering is advantageous for display. The sample is Ryanodine Receptor 1, purifie...

Energy-loss reconstructions of worm hemoglobin (lumbricus terrestris erythrocruorin) reconstructed by REEL analysis

Oct 9, 2024

Pfeil-Gardiner, Olivia; Murphy, Bonnie, 2024, "Energy-loss reconstructions of worm hemoglobin (lumbricus terrestris erythrocruorin) reconstructed by REEL analysis", https://doi.org/10.17617/3.AUERWM, Edmond, V1

Library of optimal control pulse sequences for biomolecular NMR spectroscopy

Aug 2, 2024

Joseph, David; Griesinger, Christian, 2024, "Library of optimal control pulse sequences for biomolecular NMR spectroscopy", https://doi.org/10.17617/3.CBOUXH, Edmond, V1

This data set is part of the publication Library of optimal control pulse sequences for biomolecular NMR spectroscopy (manuscript in preparation). by D. Joseph and C. Griesinger. All reported pulse sequence codes and the necessary parameter files and additional OC pulse shapes are provided to reproduce the results on a Bruker Avance Neo 1200 MHz us...

Investigation of bSSFP frequency response changes during a functional experiment at 9.4 T

Apr 19, 2024

Iyyappan Valsala, Praveen, 2024, "Investigation of bSSFP frequency response changes during a functional experiment at 9.4 T", https://doi.org/10.17617/3.ZRZUBE, Edmond, V1

All data was acquired using an accelerated 3D stack-of-spirals sequence at a Siemens Magnetom 9. 4 T human MRI scanner. A resting-state phase-cycling experiment to assess data quality and two functional phase-cycling experiments with temporally shifted paradigm (see Figure 4) to obtain SSFP profiles for active and resting conditions. An additional...

STM images and DFT structures of glycoconjugates

Oct 7, 2023

Anggara, Kelvin, 2023, "STM images and DFT structures of glycoconjugates", https://doi.org/10.17617/3.3F5JPU, Edmond, V2

Raw STM images of glycans and glycoconjugates were given in the SXM format outputted directly from the Nanonis control software, which can be opened using WSXM or Gwyddion. Computed structures were given in XYZ format, which can be opened by common molecular modeling software such as VMD, VESTA, Avogadro, ChimeraX, etc.

MINSTED tracking of single biomolecules

Sep 26, 2023

Scheiderer, Lukas; von der Emde, Henrik; Hesselink, Mira; Weber, Michael; Hell, Stefan, 2023, "MINSTED tracking of single biomolecules", https://doi.org/10.17617/3.YIQGGB, Edmond, V1

We show that MINSTED localization, a method whereby the position of a fluorophore is identified with precisely controlled beams of a STED microscope, tracks fluorophores and hence labeled biomolecules with nanometer/millisecond spatio-temporal precision. By updating the position for each detected photon, MINSTED recognizes fluorophore steps of 16 n...

Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches

Aug 25, 2023

Dimova, Rumiana, 2023, "Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches", https://doi.org/10.17617/3.CWOZQO, Edmond, V1

Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science

FUS Air-Buffer Figure Data

Mar 3, 2023

Parekh, Sapun, 2023, "FUS Air-Buffer Figure Data", https://doi.org/10.17617/3.PUBRKR, Edmond, V2

MINSTED nanoscopy enters the Ångström localization range

Dec 1, 2022

von der Emde, Henrik, 2022, "MINSTED nanoscopy enters the Ångström localization range", https://doi.org/10.17617/3.0YVCIK, Edmond, V1

Super-resolution techniques have achieved localization precisions in the nanometer regime. Here we report all-optical, room temperature localization of fluorophores with precision in the Ångström range. We built on the concept of MINSTED nanoscopy where precision is increased by encircling the fluorophore with the low-intensity central region of a...

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