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Subject: Physics Subject: Computer Science, Systems and Electrical Engineering

1 to 6 of 6 Results

A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length. Mar 26, 2024 Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1 Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses...
Supplementary material: Machine learning based classification of vector field configurations Sep 29, 2023 Pathak, Swapneel Amit; Holt, Sam; Lang, Martin; Fangohr, Hans, 2023, "Supplementary material: Machine learning based classification of vector field configurations", https://doi.org/10.17617/3.KG33A1, Edmond, V1 The data set contains the supplementary material to support the paper: Machine learning based classification of vector field configurations. The dataset contains simulation files, scripts for data generation and a notebook which shows the steps undertaken to perform the study. Th...
Supplementary material: Vision for Unified Micromagnetic Modeling (UMM) with Ubermag Sep 29, 2023 Fangohr, Hans; Lang, Martin; Holt, Samuel J. R.; Pathak, Swapneel Amit; Zulfiqar, Kauser; Beg, Marijan, 2023, "Supplementary material: Vision for Unified Micromagnetic Modeling (UMM) with Ubermag", https://doi.org/10.17617/3.D5FT5Y, Edmond, V1 Supplementary material for the "Vision for Unified Micromagnetic Modeling (UMM) with Ubermag" paper containing the source code and software requirements.
Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches Aug 25, 2023 Dimova, Rumiana, 2023, "Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches", https://doi.org/10.17617/3.CWOZQO, Edmond, V1 Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science
Earth system modeling on Modular Supercomputing Architectures: coupled atmosphere-ocean simulations with ICON 2.6.6-rc Jul 3, 2023 Bishnoi, Abhiraj; Kornblueh, Luis; Stein, Olaf, 2023, "Earth system modeling on Modular Supercomputing Architectures: coupled atmosphere-ocean simulations with ICON 2.6.6-rc", https://doi.org/10.17617/3.4NHKPH, Edmond, V1 This dataset provides the model source code for the simulations described in the publication "Earth system modeling on Modular Supercomputing Architectures: coupled atmosphere-ocean simulations with ICON 2.6.6-rc" to be submitted.
Real and Synthetic data for Hypergraph Benchmarking (processed for the Hy-MMSBM generative model) Jan 11, 2023 Ruggeri, Nicolo, 2023, "Real and Synthetic data for Hypergraph Benchmarking (processed for the Hy-MMSBM generative model)", https://doi.org/10.17617/3.HRW0OE, Edmond, V2 This dataset contains the preprocessed real hypergraph data utilized in the experiments for "Generalized inference of mesoscale structures in higher-order networks", Ruggeri N., Contisciani M., Battiston F., De Bacco C. and synthetic hypergraph data generated for experiments in t...

A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.

Mar 26, 2024

Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1

Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses...

Supplementary material: Machine learning based classification of vector field configurations

Sep 29, 2023

Pathak, Swapneel Amit; Holt, Sam; Lang, Martin; Fangohr, Hans, 2023, "Supplementary material: Machine learning based classification of vector field configurations", https://doi.org/10.17617/3.KG33A1, Edmond, V1

The data set contains the supplementary material to support the paper: Machine learning based classification of vector field configurations. The dataset contains simulation files, scripts for data generation and a notebook which shows the steps undertaken to perform the study. Th...

Supplementary material: Vision for Unified Micromagnetic Modeling (UMM) with Ubermag

Sep 29, 2023

Fangohr, Hans; Lang, Martin; Holt, Samuel J. R.; Pathak, Swapneel Amit; Zulfiqar, Kauser; Beg, Marijan, 2023, "Supplementary material: Vision for Unified Micromagnetic Modeling (UMM) with Ubermag", https://doi.org/10.17617/3.D5FT5Y, Edmond, V1

Supplementary material for the "Vision for Unified Micromagnetic Modeling (UMM) with Ubermag" paper containing the source code and software requirements.

Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches

Aug 25, 2023

Dimova, Rumiana, 2023, "Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches", https://doi.org/10.17617/3.CWOZQO, Edmond, V1

Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science

Earth system modeling on Modular Supercomputing Architectures: coupled atmosphere-ocean simulations with ICON 2.6.6-rc

Jul 3, 2023

Bishnoi, Abhiraj; Kornblueh, Luis; Stein, Olaf, 2023, "Earth system modeling on Modular Supercomputing Architectures: coupled atmosphere-ocean simulations with ICON 2.6.6-rc", https://doi.org/10.17617/3.4NHKPH, Edmond, V1

This dataset provides the model source code for the simulations described in the publication "Earth system modeling on Modular Supercomputing Architectures: coupled atmosphere-ocean simulations with ICON 2.6.6-rc" to be submitted.

Real and Synthetic data for Hypergraph Benchmarking (processed for the Hy-MMSBM generative model)

Jan 11, 2023

Ruggeri, Nicolo, 2023, "Real and Synthetic data for Hypergraph Benchmarking (processed for the Hy-MMSBM generative model)", https://doi.org/10.17617/3.HRW0OE, Edmond, V2

This dataset contains the preprocessed real hypergraph data utilized in the experiments for "Generalized inference of mesoscale structures in higher-order networks", Ruggeri N., Contisciani M., Battiston F., De Bacco C. and synthetic hypergraph data generated for experiments in t...

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