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Study Type: observational Subject: Biology

1 to 10 of 37 Results

Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation Jun 13, 2024 Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V1 This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: htt...
Data and R codes from "Pertussis vaccines, epidemiology and evolution" May 15, 2024 Domenech de Celles, Matthieu; Rohani, Pejman, 2024, "Data and R codes from "Pertussis vaccines, epidemiology and evolution"", https://doi.org/10.17617/3.A1KMUB, Edmond, V1 Data and R codes from the review article, "Pertussis vaccines, epidemiology and evolution", published in Nature Reviews Microbiology.
Loxodes magnus genome assemblies and annotations Apr 25, 2024 Seah, Kwee Boon Brandon; Vetter, David Emanuel; Swart, Estienne Carl, 2023, "Loxodes magnus genome assemblies and annotations", https://doi.org/10.17617/3.9QTROS, Edmond, V2 De novo assemblies and genome annotations for Loxodes magnus (Ciliophora: Karyorelictea), incorporating gene predictions with ambiguous genetic codes.
Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats Apr 12, 2024 Keicher, Lara, 2023, "Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats", https://doi.org/10.17617/3.MYFH42, Edmond, V2 Data sets and connected code.
Experience reduces route selection on conspecifics by the collectively migrating white stork Mar 15, 2024 Brønnvik, Hester, 2023, "Experience reduces route selection on conspecifics by the collectively migrating white stork", https://doi.org/10.17617/3.VMDBSO, Edmond, V2 The locations of migratory storks prepared for step-selection functions using convective velocity scale (w_star) and the probability density function of a utilization distribution from autocorrelated kernel density estimates (ud_pdf) as covariates.
A singularity container for derivation of spatial WMH Feb 26, 2024 Beyer, Frauke, 2024, "A singularity container for derivation of spatial WMH", https://doi.org/10.17617/3.VAUCHF, Edmond, V1 This singularity file can be used to create WMH parcellation with the Bullseye segmentation approach. Fore more details see https://gitlab.gwdg.de/frauke.beyer/charge_spatialwmh
Microclimate data measured 2020 - 2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany Feb 19, 2024 Koehl, Karin, 2024, "Microclimate data measured 2020 - 2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany", https://doi.org/10.17617/3.9A3BU8, Edmond, V1 Microclimate data measured every minute between 20.06.2019 to 18.12.2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany (52°23′55″ N, 13°3′56″ E). Description of sensors see https://doi.org/10.3389/fpls.2020.01071.
Gut microbial community of the Eurasian spruce bark beetle Ips typographus across its life stages Jan 4, 2024 Banos Quintana, Ana Patricia, 2024, "Gut microbial community of the Eurasian spruce bark beetle Ips typographus across its life stages", https://doi.org/10.17617/3.JXBYHO, Edmond, V1 We conducted a study to characterize and quantify the gut microbial communities of the Eurasian spruce bark beetle throughout its development. We provide the following supporting data: 1. R scripts used to curate and analyze the amplicon sequencing datasets 2. ASV tables resultin...
Wild-MuPPET - Multi-view posture dataset of foraging pigeons in the wild Jan 3, 2024 Waldmann, Urs; Chan, Hoi Hang Alex; Naik, Hemal; Nagy, Mate; Couzin, Iain D.; Deussen, Oliver; Goldluecke, Bastian; Kano, Fumihiro, 2024, "Wild-MuPPET - Multi-view posture dataset of foraging pigeons in the wild", https://doi.org/10.17617/3.ENDMTI, Edmond, V1 Wild-MuPPET is a multi-view posture dataset of foraging pigeons outdoors, with 500 frames of 3D-ground truth and 2000 frames of 2D-ground truth of 9 keypoints. Paper: https://doi.org/10.48550/arXiv.2308.15316 Git repository: https://github.com/alexhang212/3D-MuPPET
Videos for honey bee lifetime tracking data 2019 Dec 20, 2023 Smith, Michael; Davidson, Jacob; Wild, Benjamin; Dormagen, David; Landgraf, Tim; Couzin, Iain, 2023, "Videos for honey bee lifetime tracking data 2019", https://doi.org/10.17617/3.LLWRWR, Edmond, V1 Videos associated with barcode-based tracking of honeybees during summer of 2019, taken in an observation hive located at University of Konstanz, Germany. The observation hive was filmed using 4 cameras, with two on each side (see Cameras-ObserationHive-Diagram.png). Original vid...

Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation

Jun 13, 2024

Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V1

This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: htt...

Data and R codes from "Pertussis vaccines, epidemiology and evolution"

May 15, 2024

Domenech de Celles, Matthieu; Rohani, Pejman, 2024, "Data and R codes from "Pertussis vaccines, epidemiology and evolution"", https://doi.org/10.17617/3.A1KMUB, Edmond, V1

Data and R codes from the review article, "Pertussis vaccines, epidemiology and evolution", published in Nature Reviews Microbiology.

Loxodes magnus genome assemblies and annotations

Apr 25, 2024

Seah, Kwee Boon Brandon; Vetter, David Emanuel; Swart, Estienne Carl, 2023, "Loxodes magnus genome assemblies and annotations", https://doi.org/10.17617/3.9QTROS, Edmond, V2

De novo assemblies and genome annotations for Loxodes magnus (Ciliophora: Karyorelictea), incorporating gene predictions with ambiguous genetic codes.

Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats

Apr 12, 2024

Keicher, Lara, 2023, "Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats", https://doi.org/10.17617/3.MYFH42, Edmond, V2

Data sets and connected code.

Experience reduces route selection on conspecifics by the collectively migrating white stork

Mar 15, 2024

Brønnvik, Hester, 2023, "Experience reduces route selection on conspecifics by the collectively migrating white stork", https://doi.org/10.17617/3.VMDBSO, Edmond, V2

The locations of migratory storks prepared for step-selection functions using convective velocity scale (w_star) and the probability density function of a utilization distribution from autocorrelated kernel density estimates (ud_pdf) as covariates.

A singularity container for derivation of spatial WMH

Feb 26, 2024

Beyer, Frauke, 2024, "A singularity container for derivation of spatial WMH", https://doi.org/10.17617/3.VAUCHF, Edmond, V1

This singularity file can be used to create WMH parcellation with the Bullseye segmentation approach. Fore more details see https://gitlab.gwdg.de/frauke.beyer/charge_spatialwmh

Microclimate data measured 2020 - 2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany

Feb 19, 2024

Koehl, Karin, 2024, "Microclimate data measured 2020 - 2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany", https://doi.org/10.17617/3.9A3BU8, Edmond, V1

Microclimate data measured every minute between 20.06.2019 to 18.12.2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany (52°23′55″ N, 13°3′56″ E). Description of sensors see https://doi.org/10.3389/fpls.2020.01071.

Gut microbial community of the Eurasian spruce bark beetle Ips typographus across its life stages

Jan 4, 2024

Banos Quintana, Ana Patricia, 2024, "Gut microbial community of the Eurasian spruce bark beetle Ips typographus across its life stages", https://doi.org/10.17617/3.JXBYHO, Edmond, V1

We conducted a study to characterize and quantify the gut microbial communities of the Eurasian spruce bark beetle throughout its development. We provide the following supporting data: 1. R scripts used to curate and analyze the amplicon sequencing datasets 2. ASV tables resultin...

Wild-MuPPET - Multi-view posture dataset of foraging pigeons in the wild

Jan 3, 2024

Waldmann, Urs; Chan, Hoi Hang Alex; Naik, Hemal; Nagy, Mate; Couzin, Iain D.; Deussen, Oliver; Goldluecke, Bastian; Kano, Fumihiro, 2024, "Wild-MuPPET - Multi-view posture dataset of foraging pigeons in the wild", https://doi.org/10.17617/3.ENDMTI, Edmond, V1

Wild-MuPPET is a multi-view posture dataset of foraging pigeons outdoors, with 500 frames of 3D-ground truth and 2000 frames of 2D-ground truth of 9 keypoints. Paper: https://doi.org/10.48550/arXiv.2308.15316 Git repository: https://github.com/alexhang212/3D-MuPPET

Videos for honey bee lifetime tracking data 2019

Dec 20, 2023

Smith, Michael; Davidson, Jacob; Wild, Benjamin; Dormagen, David; Landgraf, Tim; Couzin, Iain, 2023, "Videos for honey bee lifetime tracking data 2019", https://doi.org/10.17617/3.LLWRWR, Edmond, V1

Videos associated with barcode-based tracking of honeybees during summer of 2019, taken in an observation hive located at University of Konstanz, Germany. The observation hive was filmed using 4 cameras, with two on each side (see Cameras-ObserationHive-Diagram.png). Original vid...

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