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Study Type: experimental Author Organization: Max Planck Institute of Animal Behavior

1 to 10 of 21 Results

Data and Code for "Programmed seasonal brain shrinkage in the common shrew (Sorex araneus) alters tissue diffusion properties without causing cell death" Jun 16, 2025 Baldoni, Cecilia, 2025, "Data and Code for "Programmed seasonal brain shrinkage in the common shrew (Sorex araneus) alters tissue diffusion properties without causing cell death"", https://doi.org/10.17617/3.J8V4QU, Edmond, V2 Brain plasticity, the brain's inherent ability to adapt its structure and function, is crucial for responding to environmental challenges but is usually not linked to a significant change in size. A striking exception to this is Dehnel’s phenomenon, where seasonal reversible brain size reduction occurs in some small mammals to decrease metabolic de...
Example videos for multi-object tracking Feb 21, 2025 Albi, Angela; Walter, Tristan; Carlesso, Daniele, 2025, "Example videos for multi-object tracking", https://doi.org/10.17617/3.7F5MGE, Edmond, V1 This repository contains video data used both for the development of the TRex (https://trex.run/) tracking software and for teaching its use. The filenames use the convention project_YYYYMMDD_N Where: - project stands for the project name (e.g. hexbug). In the locusts video set, the suffix after the dash (-noqr, -qr, -mix) indicates whether individ...
Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race" Feb 12, 2025 Chimento, Michael; Dalmaijer, Edwin; Klump, Barbara; Aplin, Lucy, 2025, "Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"", https://doi.org/10.17617/3.XD6UEW, Edmond, V1 This repository contains the underlying data and code to reproduce the manuscript "Temporal dynamics and policy implications in an innovation arms race". The repository contains the following data sources: 1) anonymized observational data of bin protections used by residents in a suburb of Sydney Australia from 2023 and 2024, 2) observational data...
Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation Dec 20, 2024 Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V2 This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: https://github.com/alexhang212/3D-SOCS
Data and Code for Parasitic infection is associated with reduced latency to socially learn a novel foraging task Dec 19, 2024 Chimento, Michael; Abdu, Salamatu, 2024, "Data and Code for Parasitic infection is associated with reduced latency to socially learn a novel foraging task", https://doi.org/10.17617/3.Q91UC5, Edmond, V1 This repository provides the data and code necessary to reproduce the manuscript "Parasitic infection is associated with reduced latency to socially learn a novel foraging task" by Salamatu Abdu, Michael Chimento, Gustavo Alarcón-Nieto, Klara M. Wanelik, Damien R. Farine, Hunja B. Brandl & Lucy M. Aplin. Bold denotes co-first authorship...
Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews" Dec 9, 2024 Baldoni, Cecilia, 2024, "Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"", https://doi.org/10.17617/3.XMQBQH, Edmond, V6 Data (.csv)and Models (.R) for the paper "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"
Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks" Sep 24, 2024 Brandl, Hanja; Farine, Damien, 2024, "Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"", https://doi.org/10.17617/3.BU7VOY, Edmond, V1 Dataset and code containing behavioural and hormon data of experiment testing effects of stress and stress transmission in groups of zebra finches
Data and code for Immigrant birds use payoff biased social learning in spatially variable environments Sep 19, 2024 Chimento, Michael; Alarcón-Nieto, Gustavo; Aplin, Lucy, 2024, "Data and code for Immigrant birds use payoff biased social learning in spatially variable environments", https://doi.org/10.17617/3.FXC12W, Edmond, V2 The repository contains the data and code to reproduce the study "Immigrant birds use payoff biased social learning in spatially variable environments". Please consult the readme file for file descriptions and locations, and descriptions of variable names. We simulated immigration events between captive experimental populations of great tits (Parus...
3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture May 7, 2024 naik, Hemal; Chan, Alex Hoi Hang; Yang, Junran; Delacoux, Mathilde; Couzin, D. Iain; Kano, Fumihiro; Nagy, Mate, 2023, "3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture", https://doi.org/10.17617/3.HPBBC7, Edmond, V6 The 3DPOP dataset is a large scale 2D to 3D posture, identity and trajectory dataset for freely moving pigeons. We use marker-based motion tracking to first track precise head and body position and orientation for multiple individuals, then propagated custom keypoints based on the relative positions of markers and keypoints.
Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats Apr 12, 2024 Keicher, Lara, 2023, "Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats", https://doi.org/10.17617/3.MYFH42, Edmond, V2 Data sets and connected code.

Data and Code for "Programmed seasonal brain shrinkage in the common shrew (Sorex araneus) alters tissue diffusion properties without causing cell death"

Jun 16, 2025

Baldoni, Cecilia, 2025, "Data and Code for "Programmed seasonal brain shrinkage in the common shrew (Sorex araneus) alters tissue diffusion properties without causing cell death"", https://doi.org/10.17617/3.J8V4QU, Edmond, V2

Brain plasticity, the brain's inherent ability to adapt its structure and function, is crucial for responding to environmental challenges but is usually not linked to a significant change in size. A striking exception to this is Dehnel’s phenomenon, where seasonal reversible brain size reduction occurs in some small mammals to decrease metabolic de...

Example videos for multi-object tracking

Feb 21, 2025

Albi, Angela; Walter, Tristan; Carlesso, Daniele, 2025, "Example videos for multi-object tracking", https://doi.org/10.17617/3.7F5MGE, Edmond, V1

This repository contains video data used both for the development of the TRex (https://trex.run/) tracking software and for teaching its use. The filenames use the convention project_YYYYMMDD_N Where: - project stands for the project name (e.g. hexbug). In the locusts video set, the suffix after the dash (-noqr, -qr, -mix) indicates whether individ...

Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"

Feb 12, 2025

Chimento, Michael; Dalmaijer, Edwin; Klump, Barbara; Aplin, Lucy, 2025, "Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"", https://doi.org/10.17617/3.XD6UEW, Edmond, V1

This repository contains the underlying data and code to reproduce the manuscript "Temporal dynamics and policy implications in an innovation arms race". The repository contains the following data sources: 1) anonymized observational data of bin protections used by residents in a suburb of Sydney Australia from 2023 and 2024, 2) observational data...

Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation

Dec 20, 2024

Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V2

This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: https://github.com/alexhang212/3D-SOCS

Data and Code for Parasitic infection is associated with reduced latency to socially learn a novel foraging task

Dec 19, 2024

Chimento, Michael; Abdu, Salamatu, 2024, "Data and Code for Parasitic infection is associated with reduced latency to socially learn a novel foraging task", https://doi.org/10.17617/3.Q91UC5, Edmond, V1

This repository provides the data and code necessary to reproduce the manuscript "Parasitic infection is associated with reduced latency to socially learn a novel foraging task" by **Salamatu Abdu**, **Michael Chimento**, Gustavo Alarcón-Nieto, Klara M. Wanelik, Damien R. Farine, Hunja B. Brandl & Lucy M. Aplin. **Bold denotes co-first authorship**...

Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"

Dec 9, 2024

Baldoni, Cecilia, 2024, "Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"", https://doi.org/10.17617/3.XMQBQH, Edmond, V6

Data (.csv)and Models (.R) for the paper "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"

Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"

Sep 24, 2024

Brandl, Hanja; Farine, Damien, 2024, "Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"", https://doi.org/10.17617/3.BU7VOY, Edmond, V1

Dataset and code containing behavioural and hormon data of experiment testing effects of stress and stress transmission in groups of zebra finches

Data and code for Immigrant birds use payoff biased social learning in spatially variable environments

Sep 19, 2024

Chimento, Michael; Alarcón-Nieto, Gustavo; Aplin, Lucy, 2024, "Data and code for Immigrant birds use payoff biased social learning in spatially variable environments", https://doi.org/10.17617/3.FXC12W, Edmond, V2

The repository contains the data and code to reproduce the study "Immigrant birds use payoff biased social learning in spatially variable environments". Please consult the readme file for file descriptions and locations, and descriptions of variable names. We simulated immigration events between captive experimental populations of great tits (Parus...

3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture

May 7, 2024

naik, Hemal; Chan, Alex Hoi Hang; Yang, Junran; Delacoux, Mathilde; Couzin, D. Iain; Kano, Fumihiro; Nagy, Mate, 2023, "3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture", https://doi.org/10.17617/3.HPBBC7, Edmond, V6

The 3DPOP dataset is a large scale 2D to 3D posture, identity and trajectory dataset for freely moving pigeons. We use marker-based motion tracking to first track precise head and body position and orientation for multiple individuals, then propagated custom keypoints based on the relative positions of markers and keypoints.

Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats

Apr 12, 2024

Keicher, Lara, 2023, "Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats", https://doi.org/10.17617/3.MYFH42, Edmond, V2

Data sets and connected code.

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