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Study Type: experimental Subject: Biology Publication Year: 2024

1 to 10 of 23 Results

Coordination of shoot apical meristem shape and identity by APETALA2 during floral transition in Arabidopsis Jul 29, 2024 Bertran Garcia de Olalla, Enric; Cerise, Martina; Rodríguez Maroto, Gabriel; Casanova Ferrer, Pau; Vayssières, Alice; Severing, Edouard; López Sampere, Yaiza; Wang, Kang; Schäfer, Sabine; Formosa-Jordan, Pau; Coupland, George, 2024, "Coordination of shoot apical meristem shape and identity by APETALA2 during floral transition in Arabidopsis", https://doi.org/10.17617/3.G0AEP5, Edmond, V1 Plants flower in response to environmental signals. These signals change the shape and developmental identity of the shoot apical meristem (SAM), causing it to form flowers and inflorescences. We show that the increases in SAM width and height during floral transition correlate w...
Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews" Jul 28, 2024 Baldoni, Cecilia, 2024, "Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"", https://doi.org/10.17617/3.XMQBQH, Edmond, V5 Data (.csv)and Models (.R) for the paper "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"
Euroleon nostras genome assembly Jul 11, 2024 Vogel, Heiko, 2024, "Euroleon nostras genome assembly", https://doi.org/10.17617/3.YZVPXB, Edmond, V3 Genome assembly of the Neuropteran insect Euroleon nostras (antlion). The genome assembly is based on PacBio HiFi reads and was assembled using Hifiasm (v0.16.0). The primary assembly was then checked for potential contaminants using Blobtools and TaxIdent. The final assembly con...
The Iron Nitrogenase Reduces Carbon Dioxide to Formate and Methane under Physiological Conditions: A Route to Feedstock Chemicals Jul 3, 2024 Oehlmann, Niels Nathan, 2024, "The Iron Nitrogenase Reduces Carbon Dioxide to Formate and Methane under Physiological Conditions: A Route to Feedstock Chemicals", https://doi.org/10.17617/3.45S7EP, Edmond, V1 Experimental data of the manuscript "The Iron Nitrogenase Reduces Carbon Dioxide to Formate and Methane under Physiological Conditions: A Route to Feedstock Chemicals "
Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations Jul 2, 2024 Tautz, Diethard, 2024, "Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations", https://doi.org/10.17617/3.3RLIHR, Edmond, V1 Using a newly developed full-length transcripts enrichment protocol with 5’ CAP selection, we sequenced full-length RNA transcripts of 48 individuals from outbred populations and subspecies of Mus musculus, and from the closely related sister species Mus spretus and Mus spicilegu...
Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation Jun 13, 2024 Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V1 This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: htt...
Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila" Jun 12, 2024 Bidaye, Salil Sanjay, 2024, "Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"", https://doi.org/10.17617/3.OIX8RZ, Edmond, V1 "Neural circuit mechanisms underlying context-specific halting in Drosophila" by Neha Sapkal, Nino Mancini, Divya Sthanu Kumar, Nico Spiller, Kazuma Murakami, Gianna Vitelli, Benjamin Bargeron, Kate Maier, Katharina Eichler, Gregory S.X.E. Jefferis, Philip K. Shiu, Gabriella R. S...
Data, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency" Apr 23, 2024 Delling, Jan Philipp; Bauer, Helen Friedericke; Gerlach-Arbeiter, Susanne; Schön, Michael; Jacob, Christian; Wagner, Jan; Pedro, Maria Teresa; Knöll, Bernd; Böckers, Tobias, 2024, "Data, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency"", https://doi.org/10.17617/3.UYFDS3, Edmond, V1 Repository for the datasets, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency". The folder structure is organized accordin...
Mouse de novo genes trigger a largely unique transcriptomic response Apr 23, 2024 Aldrovandi, Silvia; Fajardo Castro, R. Johana; Ullrich, Kristian; Karger, Amir; Luria, Victor; Tautz, Diethard, 2024, "Mouse de novo genes trigger a largely unique transcriptomic response", https://doi.org/10.17617/3.BNGHVS, Edmond, V1 Proteins that emerge de novo from non-coding DNA contribute to the generation of evolutionary novelty. To study de novo genes in a heterologous context, we have expressed several different mouse de novo genes (Mdngs) in a human cell line from a defined genomic integration site. E...
Dataset for the manuscript entitled "Babbling opens the sensory phase for imitative vocal learning". Apr 22, 2024 Leitao, Albertine; Gahr, Manfred, 2024, "Dataset for the manuscript entitled "Babbling opens the sensory phase for imitative vocal learning".", https://doi.org/10.17617/3.3Y67P3, Edmond, V3 This dataset comprises experimental data, sound files used for the analyses and spreadsheets corresponding to each figure presented in this study

Coordination of shoot apical meristem shape and identity by APETALA2 during floral transition in Arabidopsis

Jul 29, 2024

Bertran Garcia de Olalla, Enric; Cerise, Martina; Rodríguez Maroto, Gabriel; Casanova Ferrer, Pau; Vayssières, Alice; Severing, Edouard; López Sampere, Yaiza; Wang, Kang; Schäfer, Sabine; Formosa-Jordan, Pau; Coupland, George, 2024, "Coordination of shoot apical meristem shape and identity by APETALA2 during floral transition in Arabidopsis", https://doi.org/10.17617/3.G0AEP5, Edmond, V1

Plants flower in response to environmental signals. These signals change the shape and developmental identity of the shoot apical meristem (SAM), causing it to form flowers and inflorescences. We show that the increases in SAM width and height during floral transition correlate w...

Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"

Jul 28, 2024

Baldoni, Cecilia, 2024, "Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"", https://doi.org/10.17617/3.XMQBQH, Edmond, V5

Data (.csv)and Models (.R) for the paper "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"

Euroleon nostras genome assembly

Jul 11, 2024

Vogel, Heiko, 2024, "Euroleon nostras genome assembly", https://doi.org/10.17617/3.YZVPXB, Edmond, V3

Genome assembly of the Neuropteran insect Euroleon nostras (antlion). The genome assembly is based on PacBio HiFi reads and was assembled using Hifiasm (v0.16.0). The primary assembly was then checked for potential contaminants using Blobtools and TaxIdent. The final assembly con...

The Iron Nitrogenase Reduces Carbon Dioxide to Formate and Methane under Physiological Conditions: A Route to Feedstock Chemicals

Jul 3, 2024

Oehlmann, Niels Nathan, 2024, "The Iron Nitrogenase Reduces Carbon Dioxide to Formate and Methane under Physiological Conditions: A Route to Feedstock Chemicals", https://doi.org/10.17617/3.45S7EP, Edmond, V1

Experimental data of the manuscript "The Iron Nitrogenase Reduces Carbon Dioxide to Formate and Methane under Physiological Conditions: A Route to Feedstock Chemicals "

Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations

Jul 2, 2024

Tautz, Diethard, 2024, "Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations", https://doi.org/10.17617/3.3RLIHR, Edmond, V1

Using a newly developed full-length transcripts enrichment protocol with 5’ CAP selection, we sequenced full-length RNA transcripts of 48 individuals from outbred populations and subspecies of Mus musculus, and from the closely related sister species Mus spretus and Mus spicilegu...

Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation

Jun 13, 2024

Chimento, Michael; Chan, Hoi Hang; Aplin, Lucy; Kano, Fumihiro, 2024, "Additional dataset for: Peering into the world of wild passerines with 3D-SOCS: synchronized video capture for posture estimation", https://doi.org/10.17617/3.ZQMOJ3, Edmond, V1

This dataset includes sample data to reproduce the 3D-SOCS pipeline, as well as an annotated dataset and trained model weights for object detection and 2D keypoint estimation for Great tits and Blue tits. For more details, code and implementation of the pipeline, we refer to: htt...

Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"

Jun 12, 2024

Bidaye, Salil Sanjay, 2024, "Data repository for "Neural circuit mechanisms underlying context-specific halting in Drosophila"", https://doi.org/10.17617/3.OIX8RZ, Edmond, V1

"Neural circuit mechanisms underlying context-specific halting in Drosophila" by Neha Sapkal, Nino Mancini, Divya Sthanu Kumar, Nico Spiller, Kazuma Murakami, Gianna Vitelli, Benjamin Bargeron, Kate Maier, Katharina Eichler, Gregory S.X.E. Jefferis, Philip K. Shiu, Gabriella R. S...

Data, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency"

Apr 23, 2024

Delling, Jan Philipp; Bauer, Helen Friedericke; Gerlach-Arbeiter, Susanne; Schön, Michael; Jacob, Christian; Wagner, Jan; Pedro, Maria Teresa; Knöll, Bernd; Böckers, Tobias, 2024, "Data, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency"", https://doi.org/10.17617/3.UYFDS3, Edmond, V1

Repository for the datasets, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency". The folder structure is organized accordin...

Mouse de novo genes trigger a largely unique transcriptomic response

Apr 23, 2024

Aldrovandi, Silvia; Fajardo Castro, R. Johana; Ullrich, Kristian; Karger, Amir; Luria, Victor; Tautz, Diethard, 2024, "Mouse de novo genes trigger a largely unique transcriptomic response", https://doi.org/10.17617/3.BNGHVS, Edmond, V1

Proteins that emerge de novo from non-coding DNA contribute to the generation of evolutionary novelty. To study de novo genes in a heterologous context, we have expressed several different mouse de novo genes (Mdngs) in a human cell line from a defined genomic integration site. E...

Dataset for the manuscript entitled "Babbling opens the sensory phase for imitative vocal learning".

Apr 22, 2024

Leitao, Albertine; Gahr, Manfred, 2024, "Dataset for the manuscript entitled "Babbling opens the sensory phase for imitative vocal learning".", https://doi.org/10.17617/3.3Y67P3, Edmond, V3

This dataset comprises experimental data, sound files used for the analyses and spreadsheets corresponding to each figure presented in this study

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