Author Organization: Max Planck Institute of Colloids and Interfaces
Study Type: simulation/modelling
1 to 10 of 17 Results
Oct 7, 2024
Kullmann, Richard; Weikl, Thomas, 2023, "Force-field-based energy minimizations of cellulose crystals", https://doi.org/10.17617/3.1FPW2C, Edmond, V2
Structures and energy terms for cellulose Ibeta and II crystals composed of 52 chains of cellulose 6-mers, 8-mers, 10-mers, or 12-mers obtained from energy minimizations in two force fields. |
May 8, 2024
Gonthier, Julien, 2024, "Lab-source µCT quantitative imaging of silica aerogels during evaporative drying", https://doi.org/10.17617/3.OYI3T9, Edmond, V2
This repository contains the raw data, processed data and python scripts related to the quantitative imaging and modeling of in-operando X-ray micro-computed tomography (µCT) measurements applied to the evaporative drying of silica aerogels. The dataset are linked to two publicat... |
Apr 4, 2024
Heller, Anna-Dorothea; Valleriani, Angelo; Cipitria, Dr. Amaia, 2024, "Phase diagrams of bone remodeling using a 3D stochastic cellular automaton", https://doi.org/10.17617/3.FNXOA3, Edmond, V1
We propose a 3D stochastic cellular automaton model, governed by evolutionary game theory, to simulate bone remodeling dynamics. The model includes four voxel states: Formation, Quiescence, Resorption, and Environment. We simulate the Resorption and Formation processes on separat... |
Mar 26, 2024
Awad, Sherine; Valleriani, Angelo; Chiarugi, Davide, 2024, "A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.", https://doi.org/10.17617/3.H7OPIB, Edmond, V1
Ribofilio is a software package that estimates the drop-off rate of ribosomes. It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses... |
Jan 31, 2024
Codutti, Agnese; Charsooghi, Mohammad; Marx, Konrad; Cerdá Doñate, Elisa; Munoz, Omar; Zaslansky, Paul; Teletzki, Vitali; Robinson, Tom; Faivre, Damien; Klumpp, Stefan, 2024, "Escape problem of magnetotactic bacteria - Physiological magnetic field strength help magnetotactic bacteria navigate in simulated sediments", https://doi.org/10.17617/3.KWU1HZ, Edmond, V1
Bacterial motility is typically studied in bulk solution, while their natural habitats often are complex environments. Here, we produced microfluidic channels that contained sediment-mimicking obstacles to study swimming of magnetotactic bacteria in a near-realistic environment t... |
Jan 8, 2024
Djalali, Surusch; Yadav, Nishu; Delbianco, Martina, 2024, "Source data for "Towards glycan foldamers and programmable assemblies"", https://doi.org/10.17617/3.79M9Z6, Edmond, V1
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Aug 25, 2023
Dimova, Rumiana, 2023, "Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches", https://doi.org/10.17617/3.CWOZQO, Edmond, V1
Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science |
Apr 17, 2023
Fittolani, Giulio; Tyrikos-Ergas, Theodore; Poveda, Ana; Yu, Yang; Yadav, Nishu; Seeberger, Peter; Jiménez-Barbero, Jesús; Delbianco, Martina, 2023, "Source data for "Synthesis of a glycan hairpin"", https://doi.org/10.17617/3.EG7I36, Edmond, V1
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Nov 22, 2022
Taïeb, Hubert M.; Herment, Guillaume; Robison, Tom; Cipitria, Amaia, 2022, "Effect of capillary fluid flow on single cancer cell cycle dynamics, motility, volume and morphology", https://doi.org/10.17617/3.658NWI, Edmond, V1
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Nov 21, 2022
Rozycki, Bartosz; Weikl, Thomas; Pettmann, Johannes; van der Merwe, P. Anton; Dushek, Omer, 2022, "Data from structure-based coarse-grained MD simulations of TCR/pMHC unbinding for a large range of pulling velocities", https://doi.org/10.17617/3.2VLJ6X, Edmond, V1
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