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Loxodes magnus genome assemblies and annotations
Loxodes magnus genome assemblies and annotations
Apr 25, 2024
Seah, Kwee Boon Brandon; Vetter, David Emanuel; Swart, Estienne Carl, 2023, "Loxodes magnus genome assemblies and annotations", https://doi.org/10.17617/3.9QTROS, Edmond, V2
De novo assemblies and genome annotations for Loxodes magnus (Ciliophora: Karyorelictea), incorporating gene predictions with ambiguous genetic codes.
Shortlists of conserved domains for searches of key genes in Loxodes
Oct 18, 2023
Seah, Kwee Boon Brandon; Swart, Estienne, 2023, "Shortlists of conserved domains for searches of key genes in Loxodes", https://doi.org/10.17617/3.BOFMWS, Edmond, V1
Shortlists of conserved protein domains for different groups of genes of interest in the ciliate Loxodes magnus. Lists use InterPro domain identifiers, and were searched against InterProScan annotations. See README.md for details
Loxodes magnus indel polymorphisms and variant calling
Oct 18, 2023
Seah, Kwee Boon Brandon; Swart, Estienne, 2023, "Loxodes magnus indel polymorphisms and variant calling", https://doi.org/10.17617/3.NEV8C1, Edmond, V1
Indel and variant calling in Loxodes magnus nuclear genomes for detection of putative IESs. Please see Readme for more information.
Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA
Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA
Oct 18, 2023
Seah, Kwee Boon Brandon; Emmerich, Christiane; Singh, Aditi; Swart, Estienne, 2023, "Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA", https://doi.org/10.17617/3.VWAUYE, Edmond, V1
Localization of histones, histone modifications, and 6mA base modification to specific nuclei types in Loxodes ciliates by immunofluorescence and imaging of whole cells. This serves to verify results from Western blotting of isolated nuclei populations sorted by FACS. See README....
FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing
FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing
Oct 18, 2023
Seah, Kwee Boon Brandon; Swart, Estienne Carl, 2023, "FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing", https://doi.org/10.17617/3.Y18RPV, Edmond, V1
Run data from FACS purification of Loxodes magnus macro- and micronuclei for nucleosomal sequencing. See README.md for details
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