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Subject: Biology

1 to 10 of 182 Results

Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks" Sep 24, 2024 Brandl, Hanja; Farine, Damien, 2024, "Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"", https://doi.org/10.17617/3.BU7VOY, Edmond, V1 Dataset and code containing behavioural and hormon data of experiment testing effects of stress and stress transmission in groups of zebra finches
The expansion and diversification of epigenetic regulatory networks underpins major transitions in the evolution of land plants Sep 20, 2024 Borg, Michael, 2024, "The expansion and diversification of epigenetic regulatory networks underpins major transitions in the evolution of land plants", https://doi.org/10.17617/3.PJSEUL, Edmond, V1 Epigenetic silencing is essential for regulating gene expression and cellular diversity in eukaryotes. While transposable elements (TEs) are mostly silenced with DNA and H3K9 methylation, gene silencing is mediated by H3K27me3, an epigenetic mark deposited by the Polycomb repress...
Data and code for Immigrant birds use payoff biased social learning in spatially variable environments Sep 19, 2024 Chimento, Michael; Alarcón-Nieto, Gustavo; Aplin, Lucy, 2024, "Data and code for Immigrant birds use payoff biased social learning in spatially variable environments", https://doi.org/10.17617/3.FXC12W, Edmond, V2 The repository contains the data and code to reproduce the study "Immigrant birds use payoff biased social learning in spatially variable environments". Please consult the readme file for file descriptions and locations, and descriptions of variable names. We simulated immigratio...
Source Data for "Frequent transitions in self-assembly across the evolution of a central metabolic enzyme" Sep 18, 2024 Sendker, Franziska Luisa; Schlotthauer, Tabea; Hochberg, Georg, 2024, "Source Data for "Frequent transitions in self-assembly across the evolution of a central metabolic enzyme"", https://doi.org/10.17617/3.S0HJ48, Edmond, V1 Source data for the manuscript "Frequent transitions in self-assembly across the evolution of a central metabolic enzyme" including MP spectra, kinetic traces, growth curves and AF2-predicted models as well as phylogenetic trees, alignments, ancestral sequences.
Brachinus crepitans - Proteomics Data - Supplemental File S3 Sep 13, 2024 Vogel, Heiko, 2022, "Brachinus crepitans - Proteomics Data - Supplemental File S3", https://doi.org/10.17617/3.EIZ5MG, Edmond, V2 Supplemental File S2: Proteomics analysis by LC-MS/MS of Brachinus crepitans glands, reservoir, explosion chamber and defensive spray proteins. Combined LC-MSE data and results of MS-BLAST.
Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry Sep 11, 2024 Childebayeva, Ainash, 2024, "Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry", https://doi.org/10.17617/3.NPAC3S, Edmond, V2 This is momi2 code for demographic modeling in Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry
Supplemental data for "3D chromatin maps of a brown alga reveal U/V sex chromosome spatial organization" Sep 9, 2024 Liu, Pengfei, 2024, "Supplemental data for "3D chromatin maps of a brown alga reveal U/V sex chromosome spatial organization"", https://doi.org/10.17617/3.QXUAMN, Edmond, V1 Sex chromosomes are unique genomic regions displaying structural and evolutionary features that markedly distinguish them from autosomes. Although nuclear three dimensional (3D) folding of chromatin structure has been linked to gene expression regulation and correct developmental...
Evolvability Aug 23, 2024 Michael Barnett, 2024, "Evolvability", https://doi.org/10.17617/3.5PEE52, Edmond, V1 This record contains data accompanying the paper: Experimental evolution of evolvability Michael Barnett, Lena Zeller, Paul B. Rainey doi:10.1101/2024.05.01.592015 The folder 'Population B whole-genome seq' contains all fastQ files derived from whole-genome re-sequencing of clone...
Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos Aug 22, 2024 Chan, Hoi Hang; Putra, Prasetia; Schupp, Harald; Köchling, Johanna; Straßheim, Jana; Renner, Britta; Schroeder, Julia; Pearse, William D; Nakagawa, Shinichi; Burke, Terry; Griesser, Michael; Meltzer, Andrea; Lubrano, Saverio; Kano, Fumihiro, 2024, "Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos", https://doi.org/10.17617/3.EZNKYV, Edmond, V1 Sample dataset and weights for YOLO-Behaviour framework. Required to run demo code in the documentation. Also provided bounding box datasets for 4 case studies in YOLO format. The human dataset is not included due to privacy concerns. Code: https://github.com/alexhang212/YOLO_Beh...
Eigenstrat files for genome-wide shotgun data of ancient and present-day individuals Aug 21, 2024 Hajdinjak, Mateja, 2024, "Eigenstrat files for genome-wide shotgun data of ancient and present-day individuals", https://doi.org/10.17617/3.EGKV28, Edmond, V1 Eigenstrat files used for genome-wide f-statistics calculations, that are based on the shotgun data of analysed individuals. Includes a small perl script for converting vcf files into eigenstrat file format.

Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"

Sep 24, 2024

Brandl, Hanja; Farine, Damien, 2024, "Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"", https://doi.org/10.17617/3.BU7VOY, Edmond, V1

Dataset and code containing behavioural and hormon data of experiment testing effects of stress and stress transmission in groups of zebra finches

The expansion and diversification of epigenetic regulatory networks underpins major transitions in the evolution of land plants

Sep 20, 2024

Borg, Michael, 2024, "The expansion and diversification of epigenetic regulatory networks underpins major transitions in the evolution of land plants", https://doi.org/10.17617/3.PJSEUL, Edmond, V1

Epigenetic silencing is essential for regulating gene expression and cellular diversity in eukaryotes. While transposable elements (TEs) are mostly silenced with DNA and H3K9 methylation, gene silencing is mediated by H3K27me3, an epigenetic mark deposited by the Polycomb repress...

Data and code for Immigrant birds use payoff biased social learning in spatially variable environments

Sep 19, 2024

Chimento, Michael; Alarcón-Nieto, Gustavo; Aplin, Lucy, 2024, "Data and code for Immigrant birds use payoff biased social learning in spatially variable environments", https://doi.org/10.17617/3.FXC12W, Edmond, V2

The repository contains the data and code to reproduce the study "Immigrant birds use payoff biased social learning in spatially variable environments". Please consult the readme file for file descriptions and locations, and descriptions of variable names. We simulated immigratio...

Source Data for "Frequent transitions in self-assembly across the evolution of a central metabolic enzyme"

Sep 18, 2024

Sendker, Franziska Luisa; Schlotthauer, Tabea; Hochberg, Georg, 2024, "Source Data for "Frequent transitions in self-assembly across the evolution of a central metabolic enzyme"", https://doi.org/10.17617/3.S0HJ48, Edmond, V1

Source data for the manuscript "Frequent transitions in self-assembly across the evolution of a central metabolic enzyme" including MP spectra, kinetic traces, growth curves and AF2-predicted models as well as phylogenetic trees, alignments, ancestral sequences.

Brachinus crepitans - Proteomics Data - Supplemental File S3

Sep 13, 2024

Vogel, Heiko, 2022, "Brachinus crepitans - Proteomics Data - Supplemental File S3", https://doi.org/10.17617/3.EIZ5MG, Edmond, V2

Supplemental File S2: Proteomics analysis by LC-MS/MS of Brachinus crepitans glands, reservoir, explosion chamber and defensive spray proteins. Combined LC-MSE data and results of MS-BLAST.

Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry

Sep 11, 2024

Childebayeva, Ainash, 2024, "Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry", https://doi.org/10.17617/3.NPAC3S, Edmond, V2

This is momi2 code for demographic modeling in Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry

Supplemental data for "3D chromatin maps of a brown alga reveal U/V sex chromosome spatial organization"

Sep 9, 2024

Liu, Pengfei, 2024, "Supplemental data for "3D chromatin maps of a brown alga reveal U/V sex chromosome spatial organization"", https://doi.org/10.17617/3.QXUAMN, Edmond, V1

Sex chromosomes are unique genomic regions displaying structural and evolutionary features that markedly distinguish them from autosomes. Although nuclear three dimensional (3D) folding of chromatin structure has been linked to gene expression regulation and correct developmental...

Evolvability

Aug 23, 2024

Michael Barnett, 2024, "Evolvability", https://doi.org/10.17617/3.5PEE52, Edmond, V1

This record contains data accompanying the paper: Experimental evolution of evolvability Michael Barnett, Lena Zeller, Paul B. Rainey doi:10.1101/2024.05.01.592015 The folder 'Population B whole-genome seq' contains all fastQ files derived from whole-genome re-sequencing of clone...

Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos

Aug 22, 2024

Chan, Hoi Hang; Putra, Prasetia; Schupp, Harald; Köchling, Johanna; Straßheim, Jana; Renner, Britta; Schroeder, Julia; Pearse, William D; Nakagawa, Shinichi; Burke, Terry; Griesser, Michael; Meltzer, Andrea; Lubrano, Saverio; Kano, Fumihiro, 2024, "Sample Dataset for YOLO-Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos", https://doi.org/10.17617/3.EZNKYV, Edmond, V1

Sample dataset and weights for YOLO-Behaviour framework. Required to run demo code in the documentation. Also provided bounding box datasets for 4 case studies in YOLO format. The human dataset is not included due to privacy concerns. Code: https://github.com/alexhang212/YOLO_Beh...

Eigenstrat files for genome-wide shotgun data of ancient and present-day individuals

Aug 21, 2024

Hajdinjak, Mateja, 2024, "Eigenstrat files for genome-wide shotgun data of ancient and present-day individuals", https://doi.org/10.17617/3.EGKV28, Edmond, V1

Eigenstrat files used for genome-wide f-statistics calculations, that are based on the shotgun data of analysed individuals. Includes a small perl script for converting vcf files into eigenstrat file format.

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