Data for "Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles (Coleoptera: Bostrichidae)"

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Engl, Tobias; Kiefer, Julian Simon Thilo; Bauer, Eugen; Okude, Genta; Fukatsu, Takema; Kaltenpoth, Martin, 2022, "Data for "Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles (Coleoptera: Bostrichidae)"", https://doi.org/10.17617/3.RKKFW7, Edmond, V1

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Description	Data for "Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles (Coleoptera: Bostrichidae)", including gene alignments for phylogenetic analyses, phylogenetic trees, editable figures of phylogenetic trees and annotated mitochondrial genome contigs of Xylobiops basilaris
Subject	Biology
Keyword	Beetle, metabolic complementarity, dual symbiosis, coevolution, genome erosion, Bostrichidae, Bacteroidota
Related Publication	Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles (Coleoptera: Bostrichidae)
License/Data Use Agreement	CC BY 4.0

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	host_BUSCO_Aligned_degap_summary_22.nxs.con.tre Alignments_Trees/Unknown - 12.8 KB Published Dec 8, 2022 0 Downloads MD5: 677a4914703ad0e785d26e3867e820fd Phylogenetic tree based on host BUSCO genes	Access File File Access Public Download Options Original File Format Download Metadata Data File Citation EndNote XML RIS BibTeX
	host_BUSCO_gene_alignment.fasta Alignments_Trees/application/x-fasta - 324.7 KB Published Dec 8, 2022 10 Downloads MD5: 874e6afc598f7f0c6aabf637626f05f9 alignment of concatenated host BUSCO genes	Preview "Alignments_Trees/host_BUSCO_gene_alignment.fasta" Access File File Access Public Download Options application/x-fasta Download Metadata Data File Citation EndNote XML RIS BibTeX
	host_mt_gene.nxs.con-MrBayes_200000_updated.tre Alignments_Trees/Unknown - 15.9 KB Published Dec 8, 2022 0 Downloads MD5: 6ad6933e625d5956cf6e159d18f721d8 Phylogenetic tree based on host mitochondrial genes	Access File File Access Public Download Options Original File Format Download Metadata Data File Citation EndNote XML RIS BibTeX
	host_mt_gene_alignment.fasta Alignments_Trees/application/x-fasta - 367.5 KB Published Dec 8, 2022 5 Downloads MD5: 24128733aa5d2b596268cdf5e55f8a09 alignment of concatenated host mitochondrial genes	Preview "Alignments_Trees/host_mt_gene_alignment.fasta" Access File File Access Public Download Options application/x-fasta Download Metadata Data File Citation EndNote XML RIS BibTeX
	Supplement_Table1.xlsx Alignments_Trees/MS Excel Spreadsheet - 16.1 KB Published Dec 8, 2022 1 Download MD5: afa4bfe6a4689ba3c38278b82561def3 sample list containing sequence read archive and mitochondrial sequence accession numbers	Access File File Access Public Download Options MS Excel Spreadsheet Download Metadata Data File Citation EndNote XML RIS BibTeX
	Supplement_Table2.xlsx Alignments_Trees/MS Excel Spreadsheet - 13.7 KB Published Dec 8, 2022 0 Downloads MD5: d000cea631149359271849f12ad57faf sample list containing symbiont genome characteristics and sequence accession numbers	Access File File Access Public Download Options MS Excel Spreadsheet Download Metadata Data File Citation EndNote XML RIS BibTeX
	symbiont_16S_SILVA_alignment.fasta Alignments_Trees/application/x-fasta - 61.1 KB Published Dec 8, 2022 2 Downloads MD5: e42e1c66fd6793104afd42e2370ada8d SILVA alignment of symbiont 16S rRNA gene	Preview "Alignments_Trees/symbiont_16S_SILVA_alignment.fasta" Access File File Access Public Download Options application/x-fasta Download Metadata Data File Citation EndNote XML RIS BibTeX
	symbiont_16S_SILVA_alignment.nxs.con_MrBayes100000.tre Alignments_Trees/Unknown - 18.1 KB Published Dec 8, 2022 0 Downloads MD5: a409fc20927193dbf8d64c6afdaaf24c Phylogenetic tree based on symbiont 16S rRNA gene	Access File File Access Public Download Options Original File Format Download Metadata Data File Citation EndNote XML RIS BibTeX
	symbiont_Aligned_Genes_list.txt Alignments_Trees/Plain Text - 13.8 KB Published Dec 8, 2022 0 Downloads MD5: 4b98bb4fabb25e40ae1ef19185bc7042 list for symbiont gene alignment	Preview "Alignments_Trees/symbiont_Aligned_Genes_list.txt" Access File File Access Public Download Options Plain Text Download Metadata Data File Citation EndNote XML RIS BibTeX
	symbiont_Genes_alignment.fasta Alignments_Trees/application/x-fasta - 7.6 MB Published Dec 8, 2022 2 Downloads MD5: 0316c120cffee302c18bcfc3c954b798 alignment of concatenated symbiont genes	Preview "Alignments_Trees/symbiont_Genes_alignment.fasta" Access File File Access Public Download Options application/x-fasta Download Metadata Data File Citation EndNote XML RIS BibTeX

Citation Metadata

Persistent Identifier	doi:10.17617/3.RKKFW7
Publication Date	2022-12-08
Title	Data for "Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles (Coleoptera: Bostrichidae)"
Author	Engl, Tobias iomE, Evolutionary Ecology, Johannes Gutenberg University of Mainz Insect Symbiosis, Max Planck Institute for Chemical Ecology Kiefer, Julian Simon Thilo iomE, Evolutionary Ecology, Johannes Gutenberg University of Mainz Bauer, Eugen iomE, Evolutionary Ecology, Johannes Gutenberg University of Mainz Okude, Genta Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology Graduate School of Science, Department of Biological Sciences, University of Tokyo Fukatsu, Takema Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology Graduate School of Science, Department of Biological Sciences, University of Tokyo Graduate School of Life and Environmental Sciences, University of Tsukuba Kaltenpoth, Martin iomE, Evolutionary Ecology, Johannes Gutenberg University of Mainz Insect Symbiosis, Max Planck Institute for Chemical Ecology
Study Type	observational
Description	Data for "Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles (Coleoptera: Bostrichidae)", including gene alignments for phylogenetic analyses, phylogenetic trees, editable figures of phylogenetic trees and annotated mitochondrial genome contigs of Xylobiops basilaris
Subject	Biology
Keyword	Beetle metabolic complementarity dual symbiosis coevolution genome erosion Bostrichidae Bacteroidota
Language	English
Grant Information	Johannes Gutenberg University Mainz: NA (intramural funding) European Research Council: CoG 819585 Japan Science and Technology Agency: ERATO JPMJER1902
Depositor	Engl, Tobias
Deposit Date	2022-12-08
Related Publication	Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles (Coleoptera: Bostrichidae)
Related Datasets	SRR19201388, SRR19201387, SRR19201365, SRR19201357, SRR19201376, SRR19201356, SRR19201354, SRR19201355, SRR19201352, SRR19201353, SRR19201382-SRR19201386, SRR19201381, SRR19201380, DRR414867, SRR19201379, SRR19201378, SRR19201377, SRR19201375, SRR19201374, FJ613421, SRR19201373, SRR19201371, SRR19201372, SRR19201370, SRR19201369, SRR19201368, SRR19201367, SRR19201366, SRR2083737, SRR19201364, SRR19201363, SRR19201362, SRR19201361, SRR19201360, SRR19201359, SRR19201358, JX412742, ON707259, ON707246, ON707247, ON707249, ON707238, ON707239, ON707240, ON707253, , ON707243, ON707252, ON707261, ON707241, ON707234, ON707235, ON707236, ON707244, ON707245, ON707248, ON707250, ON707242, ON707260, ON707237, ON707254, ON707255, ON707256, ON707257, ON707258, JAMYEW000000000, CP100318, CP100320, CP100321, CP100319, CP099825, JAMYEV000000000, CP099821, CP099823, CP099824, CP099822, CP099826, CP099827, CP099828, JAMYEX000000000, CP099829, JAMYEY000000000, JAMYEZ000000000, CP099830, ON922557-ON922562, CP099831, JAMYFA000000000, JAMYFC000000000, JAMYFB000000000, CP099832, ON922555-ON922556, ON922537-ON922554, CP099833

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